Strain Fitness in Escherichia coli BL21 around ECD_01857

Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01856 and ECD_01857 are separated by 45 nucleotidesECD_01857 and ECD_01858 are separated by 144 nucleotidesECD_01858 and ECD_01859 are separated by 20 nucleotides ECD_01856: ECD_01856 - methyl-accepting protein IV, at 1,915,301 to 1,916,902 _01856 ECD_01857: ECD_01857 - methyl-accepting chemotaxis protein II, at 1,916,948 to 1,918,609 _01857 ECD_01858: ECD_01858 - purine-binding chemotaxis protein, at 1,918,754 to 1,919,257 _01858 ECD_01859: ECD_01859 - fused chemotactic sensory histidine kinase in two-component regulatory system with CheB and CheY: sensory histidine kinase/signal sensing protein, at 1,919,278 to 1,921,242 _01859 Position (kb) 1916 1917 1918 1919Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1916.115 kb on - strand, within ECD_01856at 1916.185 kb on - strand, within ECD_01856at 1916.185 kb on - strand, within ECD_01856at 1916.187 kb on - strand, within ECD_01856at 1916.298 kb on + strand, within ECD_01856at 1916.354 kb on - strand, within ECD_01856at 1916.671 kb on - strand, within ECD_01856at 1916.674 kb on + strand, within ECD_01856at 1916.674 kb on + strand, within ECD_01856at 1916.675 kb on - strand, within ECD_01856at 1916.675 kb on - strand, within ECD_01856at 1916.675 kb on - strand, within ECD_01856at 1917.784 kb on - strand, within ECD_01857at 1918.255 kb on + strand, within ECD_01857at 1918.434 kb on - strand, within ECD_01857at 1918.998 kb on - strand, within ECD_01858at 1919.298 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_10
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1,916,115 - ECD_01856 0.51 +1.3
1,916,185 - ECD_01856 0.55 -0.8
1,916,185 - ECD_01856 0.55 +0.5
1,916,187 - ECD_01856 0.55 -0.3
1,916,298 + ECD_01856 0.62 -1.0
1,916,354 - ECD_01856 0.66 -1.3
1,916,671 - ECD_01856 0.86 -1.5
1,916,674 + ECD_01856 0.86 +0.5
1,916,674 + ECD_01856 0.86 -0.3
1,916,675 - ECD_01856 0.86 -0.5
1,916,675 - ECD_01856 0.86 -1.1
1,916,675 - ECD_01856 0.86 +2.9
1,917,784 - ECD_01857 0.50 -0.3
1,918,255 + ECD_01857 0.79 -0.4
1,918,434 - ECD_01857 0.89 -1.9
1,918,998 - ECD_01858 0.48 -1.5
1,919,298 + +0.5

Or see this region's nucleotide sequence