Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01799 and ECD_01800 are separated by 45 nucleotides ECD_01800 and ECD_01801 are separated by 191 nucleotides
ECD_01799: ECD_01799 - putative transporter, at 1,856,001 to 1,857,374
_01799
ECD_01800: ECD_01800 - putative endopeptidase, at 1,857,420 to 1,858,301
_01800
ECD_01801: ECD_01801 - carboxy-terminal protease for penicillin-binding protein 3, at 1,858,493 to 1,860,541
_01801
Position (kb)
1857
1858
1859 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1856.654 kb on + strand, within ECD_01799 at 1856.976 kb on + strand, within ECD_01799 at 1857.155 kb on + strand, within ECD_01799 at 1857.343 kb on + strand at 1857.422 kb on - strand at 1857.431 kb on - strand at 1857.510 kb on - strand, within ECD_01800 at 1857.719 kb on - strand, within ECD_01800 at 1858.007 kb on - strand, within ECD_01800 at 1858.062 kb on - strand, within ECD_01800 at 1858.126 kb on - strand, within ECD_01800 at 1858.222 kb on - strand at 1858.495 kb on - strand at 1858.717 kb on - strand, within ECD_01801 at 1858.979 kb on - strand, within ECD_01801 at 1858.979 kb on - strand, within ECD_01801 at 1859.026 kb on - strand, within ECD_01801 at 1859.061 kb on - strand, within ECD_01801 at 1859.061 kb on - strand, within ECD_01801 at 1859.073 kb on + strand, within ECD_01801 at 1859.077 kb on + strand, within ECD_01801 at 1859.078 kb on - strand, within ECD_01801 at 1859.078 kb on - strand, within ECD_01801 at 1859.078 kb on - strand, within ECD_01801 at 1859.228 kb on - strand, within ECD_01801 at 1859.230 kb on - strand, within ECD_01801 at 1859.230 kb on - strand, within ECD_01801 at 1859.230 kb on - strand, within ECD_01801
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_10 remove 1,856,654 + ECD_01799 0.48 +3.1 1,856,976 + ECD_01799 0.71 -1.4 1,857,155 + ECD_01799 0.84 +0.2 1,857,343 + -0.3 1,857,422 - +0.4 1,857,431 - -0.1 1,857,510 - ECD_01800 0.10 -1.2 1,857,719 - ECD_01800 0.34 -1.1 1,858,007 - ECD_01800 0.67 -0.5 1,858,062 - ECD_01800 0.73 -0.1 1,858,126 - ECD_01800 0.80 -0.4 1,858,222 - -0.7 1,858,495 - +0.6 1,858,717 - ECD_01801 0.11 -0.6 1,858,979 - ECD_01801 0.24 -2.3 1,858,979 - ECD_01801 0.24 -1.4 1,859,026 - ECD_01801 0.26 +0.0 1,859,061 - ECD_01801 0.28 -1.6 1,859,061 - ECD_01801 0.28 -1.3 1,859,073 + ECD_01801 0.28 -0.4 1,859,077 + ECD_01801 0.29 -1.0 1,859,078 - ECD_01801 0.29 -0.6 1,859,078 - ECD_01801 0.29 -2.4 1,859,078 - ECD_01801 0.29 -2.2 1,859,228 - ECD_01801 0.36 -1.3 1,859,230 - ECD_01801 0.36 -2.2 1,859,230 - ECD_01801 0.36 -2.7 1,859,230 - ECD_01801 0.36 -1.6
Or see this region's nucleotide sequence