Strain Fitness in Escherichia coli BL21 around ECD_01782

Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01780 and ECD_01781 are separated by 119 nucleotidesECD_01781 and ECD_01782 are separated by 73 nucleotidesECD_01782 and ECD_01783 are separated by 3 nucleotidesECD_01783 and ECD_01784 are separated by 183 nucleotides ECD_01780: ECD_01780 - DUF1889 family protein, at 1,839,860 to 1,840,159 _01780 ECD_01781: ECD_01781 - UPF0181 family protein, at 1,840,279 to 1,840,458 _01781 ECD_01782: ECD_01782 - aminodeoxychorismate synthase, subunit I, at 1,840,532 to 1,841,893 _01782 ECD_01783: ECD_01783 - putative CoA pyrophosphohydrolase, weak 3-phosphohydroxypyruvate phosphatase, at 1,841,897 to 1,842,475 _01783 ECD_01784: ECD_01784 - L-serine dehydratase 1, at 1,842,659 to 1,844,023 _01784 Position (kb) 1840 1841 1842Strain fitness (log2 ratio) -2 -1 0 1at 1839.673 kb on + strandat 1839.820 kb on + strandat 1840.915 kb on + strand, within ECD_01782at 1841.231 kb on - strand, within ECD_01782at 1841.560 kb on + strand, within ECD_01782at 1841.692 kb on + strand, within ECD_01782at 1841.753 kb on - strand, within ECD_01782at 1841.788 kb on - strandat 1841.871 kb on + strandat 1842.216 kb on + strand, within ECD_01783at 1842.479 kb on + strandat 1842.489 kb on + strandat 1842.489 kb on + strandat 1842.490 kb on - strandat 1842.597 kb on + strandat 1842.615 kb on + strandat 1842.615 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_10
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1,839,673 + +0.5
1,839,820 + -0.9
1,840,915 + ECD_01782 0.28 -2.0
1,841,231 - ECD_01782 0.51 +0.2
1,841,560 + ECD_01782 0.75 -0.9
1,841,692 + ECD_01782 0.85 -0.1
1,841,753 - ECD_01782 0.90 -1.9
1,841,788 - -0.6
1,841,871 + +0.2
1,842,216 + ECD_01783 0.55 -0.2
1,842,479 + +1.3
1,842,489 + -0.4
1,842,489 + -0.7
1,842,490 - -2.1
1,842,597 + -0.7
1,842,615 + +1.1
1,842,615 + +0.7

Or see this region's nucleotide sequence