Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01780 and ECD_01781 are separated by 119 nucleotides ECD_01781 and ECD_01782 are separated by 73 nucleotides ECD_01782 and ECD_01783 are separated by 3 nucleotides ECD_01783 and ECD_01784 are separated by 183 nucleotides
ECD_01780: ECD_01780 - DUF1889 family protein, at 1,839,860 to 1,840,159
_01780
ECD_01781: ECD_01781 - UPF0181 family protein, at 1,840,279 to 1,840,458
_01781
ECD_01782: ECD_01782 - aminodeoxychorismate synthase, subunit I, at 1,840,532 to 1,841,893
_01782
ECD_01783: ECD_01783 - putative CoA pyrophosphohydrolase, weak 3-phosphohydroxypyruvate phosphatase, at 1,841,897 to 1,842,475
_01783
ECD_01784: ECD_01784 - L-serine dehydratase 1, at 1,842,659 to 1,844,023
_01784
Position (kb)
1840
1841
1842 Strain fitness (log2 ratio)
-2
-1
0
1 at 1839.673 kb on + strand at 1839.820 kb on + strand at 1840.915 kb on + strand, within ECD_01782 at 1841.231 kb on - strand, within ECD_01782 at 1841.560 kb on + strand, within ECD_01782 at 1841.692 kb on + strand, within ECD_01782 at 1841.753 kb on - strand, within ECD_01782 at 1841.788 kb on - strand at 1841.871 kb on + strand at 1842.216 kb on + strand, within ECD_01783 at 1842.479 kb on + strand at 1842.489 kb on + strand at 1842.489 kb on + strand at 1842.490 kb on - strand at 1842.597 kb on + strand at 1842.615 kb on + strand at 1842.615 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_10 remove 1,839,673 + +0.5 1,839,820 + -0.9 1,840,915 + ECD_01782 0.28 -2.0 1,841,231 - ECD_01782 0.51 +0.2 1,841,560 + ECD_01782 0.75 -0.9 1,841,692 + ECD_01782 0.85 -0.1 1,841,753 - ECD_01782 0.90 -1.9 1,841,788 - -0.6 1,841,871 + +0.2 1,842,216 + ECD_01783 0.55 -0.2 1,842,479 + +1.3 1,842,489 + -0.4 1,842,489 + -0.7 1,842,490 - -2.1 1,842,597 + -0.7 1,842,615 + +1.1 1,842,615 + +0.7
Or see this region's nucleotide sequence