Strain Fitness in Escherichia coli BL21 around ECD_01656

Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01654 and ECD_01655 are separated by 99 nucleotidesECD_01655 and ECD_01656 overlap by 4 nucleotidesECD_01656 and ECD_01657 are separated by 388 nucleotides ECD_01654: ECD_01654 - uncharacterized protein, at 1,709,349 to 1,709,537 _01654 ECD_01655: ECD_01655 - 1,4-dihydroxy-2-naphthoyl-CoA hydrolase, at 1,709,637 to 1,710,047 _01655 ECD_01656: ECD_01656 - putative FAD-linked oxidoreductase, at 1,710,044 to 1,713,100 _01656 ECD_01657: ECD_01657 - UPF0118 family inner membrane protein, at 1,713,489 to 1,714,601 _01657 Position (kb) 1710 1711 1712 1713 1714Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1709.268 kb on + strandat 1709.537 kb on + strandat 1709.833 kb on - strand, within ECD_01655at 1709.833 kb on - strand, within ECD_01655at 1709.833 kb on - strand, within ECD_01655at 1710.475 kb on - strand, within ECD_01656at 1710.703 kb on - strand, within ECD_01656at 1710.706 kb on - strand, within ECD_01656at 1710.945 kb on + strand, within ECD_01656at 1711.696 kb on + strand, within ECD_01656at 1711.753 kb on - strand, within ECD_01656at 1711.753 kb on - strand, within ECD_01656at 1711.753 kb on - strand, within ECD_01656at 1711.906 kb on - strand, within ECD_01656at 1712.120 kb on - strand, within ECD_01656at 1712.255 kb on - strand, within ECD_01656at 1712.803 kb on + strandat 1712.959 kb on - strandat 1712.963 kb on - strandat 1712.963 kb on - strandat 1713.102 kb on - strandat 1713.102 kb on - strandat 1713.166 kb on - strandat 1713.247 kb on - strandat 1713.709 kb on + strand, within ECD_01657at 1713.828 kb on - strand, within ECD_01657at 1713.830 kb on + strand, within ECD_01657at 1713.921 kb on + strand, within ECD_01657

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_10
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1,709,268 + -0.4
1,709,537 + +0.6
1,709,833 - ECD_01655 0.48 +1.4
1,709,833 - ECD_01655 0.48 -0.4
1,709,833 - ECD_01655 0.48 -0.4
1,710,475 - ECD_01656 0.14 +0.2
1,710,703 - ECD_01656 0.22 -0.4
1,710,706 - ECD_01656 0.22 -1.3
1,710,945 + ECD_01656 0.29 -1.6
1,711,696 + ECD_01656 0.54 +0.7
1,711,753 - ECD_01656 0.56 -0.3
1,711,753 - ECD_01656 0.56 -0.1
1,711,753 - ECD_01656 0.56 +1.0
1,711,906 - ECD_01656 0.61 -0.3
1,712,120 - ECD_01656 0.68 +0.1
1,712,255 - ECD_01656 0.72 +0.4
1,712,803 + +2.9
1,712,959 - +2.7
1,712,963 - +1.1
1,712,963 - -0.5
1,713,102 - -0.3
1,713,102 - -0.3
1,713,166 - -2.0
1,713,247 - +1.1
1,713,709 + ECD_01657 0.20 +0.2
1,713,828 - ECD_01657 0.30 -0.9
1,713,830 + ECD_01657 0.31 -2.1
1,713,921 + ECD_01657 0.39 +0.0

Or see this region's nucleotide sequence