Strain Fitness in Escherichia coli BL21 around ECD_01623

Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01621 and ECD_01622 are separated by 102 nucleotidesECD_01622 and ECD_01623 are separated by 92 nucleotidesECD_01623 and ECD_01624 are separated by 50 nucleotidesECD_01624 and ECD_01625 are separated by 333 nucleotides ECD_01621: ECD_01621 - glyoxalase I, Ni-dependent, at 1,673,033 to 1,673,440 _01621 ECD_01622: ECD_01622 - RNase T; exoribonuclease T; structured DNA 3, at 1,673,543 to 1,674,190 _01622 ECD_01623: ECD_01623 - putative ATP-dependent helicase, at 1,674,283 to 1,678,899 _01623 ECD_01624: ECD_01624 - glutaredoxin-4, at 1,678,950 to 1,679,297 _01624 ECD_01625: ECD_01625 - murein DD-endopeptidase, space-maker hydrolase, at 1,679,631 to 1,680,446 _01625 Position (kb) 1674 1675 1676 1677 1678 1679Strain fitness (log2 ratio) -1 0 1at 1673.314 kb on + strand, within ECD_01621at 1673.438 kb on + strandat 1673.438 kb on + strandat 1674.231 kb on - strandat 1674.232 kb on + strandat 1674.262 kb on + strandat 1674.813 kb on + strand, within ECD_01623at 1675.512 kb on - strand, within ECD_01623at 1675.712 kb on + strand, within ECD_01623at 1675.945 kb on + strand, within ECD_01623at 1675.945 kb on + strand, within ECD_01623at 1677.162 kb on + strand, within ECD_01623at 1677.332 kb on + strand, within ECD_01623at 1678.817 kb on + strandat 1678.979 kb on - strandat 1679.027 kb on - strand, within ECD_01624at 1679.100 kb on - strand, within ECD_01624at 1679.153 kb on - strand, within ECD_01624

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_10
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1,673,314 + ECD_01621 0.69 -0.6
1,673,438 + +1.0
1,673,438 + -0.4
1,674,231 - +0.4
1,674,232 + -1.0
1,674,262 + -0.3
1,674,813 + ECD_01623 0.11 -0.7
1,675,512 - ECD_01623 0.27 -1.5
1,675,712 + ECD_01623 0.31 -1.4
1,675,945 + ECD_01623 0.36 -0.3
1,675,945 + ECD_01623 0.36 -0.6
1,677,162 + ECD_01623 0.62 -0.5
1,677,332 + ECD_01623 0.66 +0.1
1,678,817 + +0.5
1,678,979 - +1.4
1,679,027 - ECD_01624 0.22 +0.5
1,679,100 - ECD_01624 0.43 +1.4
1,679,153 - ECD_01624 0.58 -0.1

Or see this region's nucleotide sequence