Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01621 and ECD_01622 are separated by 102 nucleotides ECD_01622 and ECD_01623 are separated by 92 nucleotides ECD_01623 and ECD_01624 are separated by 50 nucleotides ECD_01624 and ECD_01625 are separated by 333 nucleotides
ECD_01621: ECD_01621 - glyoxalase I, Ni-dependent, at 1,673,033 to 1,673,440
_01621
ECD_01622: ECD_01622 - RNase T; exoribonuclease T; structured DNA 3, at 1,673,543 to 1,674,190
_01622
ECD_01623: ECD_01623 - putative ATP-dependent helicase, at 1,674,283 to 1,678,899
_01623
ECD_01624: ECD_01624 - glutaredoxin-4, at 1,678,950 to 1,679,297
_01624
ECD_01625: ECD_01625 - murein DD-endopeptidase, space-maker hydrolase, at 1,679,631 to 1,680,446
_01625
Position (kb)
1674
1675
1676
1677
1678
1679 Strain fitness (log2 ratio)
-1
0
1 at 1673.314 kb on + strand, within ECD_01621 at 1673.438 kb on + strand at 1673.438 kb on + strand at 1674.231 kb on - strand at 1674.232 kb on + strand at 1674.262 kb on + strand at 1674.813 kb on + strand, within ECD_01623 at 1675.512 kb on - strand, within ECD_01623 at 1675.712 kb on + strand, within ECD_01623 at 1675.945 kb on + strand, within ECD_01623 at 1675.945 kb on + strand, within ECD_01623 at 1677.162 kb on + strand, within ECD_01623 at 1677.332 kb on + strand, within ECD_01623 at 1678.817 kb on + strand at 1678.979 kb on - strand at 1679.027 kb on - strand, within ECD_01624 at 1679.100 kb on - strand, within ECD_01624 at 1679.153 kb on - strand, within ECD_01624
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_10 remove 1,673,314 + ECD_01621 0.69 -0.6 1,673,438 + +1.0 1,673,438 + -0.4 1,674,231 - +0.4 1,674,232 + -1.0 1,674,262 + -0.3 1,674,813 + ECD_01623 0.11 -0.7 1,675,512 - ECD_01623 0.27 -1.5 1,675,712 + ECD_01623 0.31 -1.4 1,675,945 + ECD_01623 0.36 -0.3 1,675,945 + ECD_01623 0.36 -0.6 1,677,162 + ECD_01623 0.62 -0.5 1,677,332 + ECD_01623 0.66 +0.1 1,678,817 + +0.5 1,678,979 - +1.4 1,679,027 - ECD_01624 0.22 +0.5 1,679,100 - ECD_01624 0.43 +1.4 1,679,153 - ECD_01624 0.58 -0.1
Or see this region's nucleotide sequence