Strain Fitness in Escherichia coli BL21 around ECD_01561

Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01559 and ECD_01560 are separated by 42 nucleotidesECD_01560 and ECD_01561 are separated by 194 nucleotidesECD_01561 and ECD_01562 overlap by 48 nucleotidesECD_01562 and ECD_01563 are separated by 124 nucleotides ECD_01559: ECD_01559 - oxidoreductase, membrane subunit, at 1,608,806 to 1,609,660 _01559 ECD_01560: ECD_01560 - twin-argninine leader-binding protein for DmsA and TorA, at 1,609,703 to 1,610,317 _01560 ECD_01561: ECD_01561 - H(+)/Cl(-) exchange transporter, at 1,610,512 to 1,611,768 _01561 ECD_01562: ECD_01562 - putative dethiobiotin synthetase, at 1,611,721 to 1,612,416 _01562 ECD_01563: ECD_01563 - glucosamine anaerobic growth regulon transcriptional repressor; autorepressor, at 1,612,541 to 1,613,761 _01563 Position (kb) 1610 1611 1612Strain fitness (log2 ratio) -1 0 1 2at 1609.564 kb on + strand, within ECD_01559at 1610.487 kb on - strandat 1610.765 kb on - strand, within ECD_01561at 1611.043 kb on - strand, within ECD_01561at 1611.140 kb on + strand, within ECD_01561at 1611.777 kb on - strandat 1612.085 kb on - strand, within ECD_01562at 1612.201 kb on - strand, within ECD_01562at 1612.305 kb on + strand, within ECD_01562at 1612.446 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_10
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1,609,564 + ECD_01559 0.89 +0.7
1,610,487 - -0.8
1,610,765 - ECD_01561 0.20 +0.7
1,611,043 - ECD_01561 0.42 -1.1
1,611,140 + ECD_01561 0.50 -0.6
1,611,777 - +0.0
1,612,085 - ECD_01562 0.52 -1.5
1,612,201 - ECD_01562 0.69 -1.2
1,612,305 + ECD_01562 0.84 +2.4
1,612,446 - +1.8

Or see this region's nucleotide sequence