Strain Fitness in Escherichia coli BL21 around ECD_01353

Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01352 and ECD_01353 are separated by 207 nucleotidesECD_01353 and ECD_01354 overlap by 4 nucleotidesECD_01354 and ECD_01355 are separated by 7 nucleotidesECD_01355 and ECD_01356 are separated by 171 nucleotides ECD_01352: ECD_01352 - fermentative D-lactate dehydrogenase, NAD-dependent, at 1,417,413 to 1,418,402 _01352 ECD_01353: ECD_01353 - putative membrane-anchored protein, function unknown, at 1,418,610 to 1,421,249 _01353 ECD_01354: ECD_01354 - lipoprotein, at 1,421,246 to 1,421,431 _01354 ECD_01355: ECD_01355 - DUF1318 family protein, at 1,421,439 to 1,421,765 _01355 ECD_01356: ECD_01356 - transcriptional activator for tynA and feaB, at 1,421,937 to 1,422,842 _01356 Position (kb) 1418 1419 1420 1421 1422Strain fitness (log2 ratio) -1 0 1 2at 1417.841 kb on - strand, within ECD_01352at 1417.980 kb on - strand, within ECD_01352at 1417.980 kb on - strand, within ECD_01352at 1417.980 kb on - strand, within ECD_01352at 1418.191 kb on + strand, within ECD_01352at 1418.191 kb on + strand, within ECD_01352at 1418.385 kb on - strandat 1418.602 kb on - strandat 1418.624 kb on + strandat 1418.739 kb on - strandat 1419.128 kb on + strand, within ECD_01353at 1419.863 kb on + strand, within ECD_01353at 1421.069 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_10
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1,417,841 - ECD_01352 0.43 -1.4
1,417,980 - ECD_01352 0.57 +0.8
1,417,980 - ECD_01352 0.57 -0.4
1,417,980 - ECD_01352 0.57 -0.7
1,418,191 + ECD_01352 0.79 -1.0
1,418,191 + ECD_01352 0.79 +2.0
1,418,385 - -1.3
1,418,602 - +0.3
1,418,624 + -1.4
1,418,739 - +1.8
1,419,128 + ECD_01353 0.20 -0.7
1,419,863 + ECD_01353 0.47 -1.1
1,421,069 + -1.4

Or see this region's nucleotide sequence