Strain Fitness in Escherichia coli BL21 around ECD_01123

Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01121 and ECD_01122 overlap by 4 nucleotidesECD_01122 and ECD_01123 overlap by 4 nucleotidesECD_01123 and ECD_01124 are separated by 13 nucleotides ECD_01121: ECD_01121 - spermidine/putrescine ABC transporter periplasmic binding protein, at 1,185,151 to 1,186,197 _01121 ECD_01122: ECD_01122 - spermidine/putrescine ABC transporter permease, at 1,186,194 to 1,186,988 _01122 ECD_01123: ECD_01123 - spermidine/putrescine ABC transporter permease, at 1,186,985 to 1,187,812 _01123 ECD_01124: ECD_01124 - spermidine/putrescine ABC transporter ATPase, at 1,187,826 to 1,188,962 _01124 Position (kb) 1186 1187 1188Strain fitness (log2 ratio) -1 0 1 2 3at 1186.002 kb on - strand, within ECD_01121at 1186.002 kb on - strand, within ECD_01121at 1186.023 kb on - strand, within ECD_01121at 1186.104 kb on - strandat 1186.110 kb on - strandat 1186.282 kb on - strand, within ECD_01122at 1186.417 kb on - strand, within ECD_01122at 1186.584 kb on - strand, within ECD_01122at 1186.934 kb on - strandat 1187.176 kb on - strand, within ECD_01123at 1187.649 kb on - strand, within ECD_01123at 1188.067 kb on - strand, within ECD_01124at 1188.067 kb on - strand, within ECD_01124at 1188.128 kb on - strand, within ECD_01124

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_10
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1,186,002 - ECD_01121 0.81 +3.2
1,186,002 - ECD_01121 0.81 +1.6
1,186,023 - ECD_01121 0.83 +0.2
1,186,104 - -0.2
1,186,110 - +0.0
1,186,282 - ECD_01122 0.11 +1.4
1,186,417 - ECD_01122 0.28 +1.4
1,186,584 - ECD_01122 0.49 -1.0
1,186,934 - +1.9
1,187,176 - ECD_01123 0.23 +1.2
1,187,649 - ECD_01123 0.80 -0.5
1,188,067 - ECD_01124 0.21 +1.3
1,188,067 - ECD_01124 0.21 +1.5
1,188,128 - ECD_01124 0.27 +1.2

Or see this region's nucleotide sequence