Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01098 and ECD_01099 are separated by 333 nucleotides ECD_01099 and ECD_01100 are separated by 2 nucleotides ECD_01100 and ECD_01101 are separated by 13 nucleotides ECD_01101 and ECD_01102 overlap by 20 nucleotides
ECD_01098: ECD_01098 - ferric-rhodotorulic acid outer membrane transporter, at 1,161,929 to 1,164,118
_01098
ECD_01099: ECD_01099 - purine nucleoside phosphoramidase, dadA activator protein, at 1,164,452 to 1,164,811
_01099
ECD_01100: ECD_01100 - uncharacterized protein, at 1,164,814 to 1,165,191
_01100
ECD_01101: ECD_01101 - OM lipoprotein stimulator of MrcB transpeptidase, at 1,165,205 to 1,165,846
_01101
ECD_01102: ECD_01102 - thiamine kinase, at 1,165,827 to 1,166,651
_01102
Position (kb) 1164
1165
1166 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 1164.045 kb on - strand at 1164.181 kb on - strand at 1164.382 kb on + strand at 1164.387 kb on + strand at 1164.466 kb on + strand at 1164.568 kb on + strand, within ECD_01099 at 1165.177 kb on + strand at 1165.182 kb on - strand at 1165.183 kb on + strand at 1165.698 kb on + strand, within ECD_01101 at 1165.734 kb on + strand, within ECD_01101 at 1165.734 kb on + strand, within ECD_01101 at 1165.913 kb on + strand, within ECD_01102 at 1166.069 kb on - strand, within ECD_01102 at 1166.160 kb on + strand, within ECD_01102 at 1166.164 kb on + strand, within ECD_01102
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_10 remove 1,164,045 - +0.8 1,164,181 - +0.2 1,164,382 + -1.0 1,164,387 + -2.3 1,164,466 + -1.3 1,164,568 + ECD_01099 0.32 -1.3 1,165,177 + -0.1 1,165,182 - +3.7 1,165,183 + -1.8 1,165,698 + ECD_01101 0.77 -0.7 1,165,734 + ECD_01101 0.82 -0.6 1,165,734 + ECD_01101 0.82 -1.1 1,165,913 + ECD_01102 0.10 +0.5 1,166,069 - ECD_01102 0.29 -1.2 1,166,160 + ECD_01102 0.40 -0.1 1,166,164 + ECD_01102 0.41 +0.9
Or see this region's nucleotide sequence