Strain Fitness in Escherichia coli BL21 around ECD_01021

Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01020 and ECD_01021 are separated by 5 nucleotidesECD_01021 and ECD_01022 are separated by 344 nucleotides ECD_01020: ECD_01020 - inactive ferrous ion transporter EfeUOB, at 1,086,526 to 1,087,653 _01020 ECD_01021: ECD_01021 - deferrrochelatase, periplasmic, at 1,087,659 to 1,088,930 _01021 ECD_01022: ECD_01022 - ATP-binding protein; putative PhoH family P-loop ATPase, at 1,089,275 to 1,090,339 _01022 Position (kb) 1087 1088 1089Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1086.825 kb on + strand, within ECD_01020at 1086.940 kb on + strand, within ECD_01020at 1086.940 kb on + strand, within ECD_01020at 1086.949 kb on + strand, within ECD_01020at 1086.949 kb on + strand, within ECD_01020at 1086.949 kb on + strand, within ECD_01020at 1087.064 kb on - strand, within ECD_01020at 1087.244 kb on - strand, within ECD_01020at 1087.245 kb on + strand, within ECD_01020at 1087.245 kb on + strand, within ECD_01020at 1087.404 kb on + strand, within ECD_01020at 1087.525 kb on + strand, within ECD_01020at 1087.600 kb on - strandat 1087.665 kb on + strandat 1087.667 kb on + strandat 1087.668 kb on - strandat 1088.194 kb on + strand, within ECD_01021at 1088.243 kb on + strand, within ECD_01021at 1088.321 kb on + strand, within ECD_01021at 1088.463 kb on + strand, within ECD_01021at 1088.473 kb on + strand, within ECD_01021at 1088.712 kb on + strand, within ECD_01021at 1089.463 kb on - strand, within ECD_01022at 1089.625 kb on + strand, within ECD_01022at 1089.853 kb on + strand, within ECD_01022at 1089.853 kb on + strand, within ECD_01022

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_10
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1,086,825 + ECD_01020 0.27 +0.6
1,086,940 + ECD_01020 0.37 +0.6
1,086,940 + ECD_01020 0.37 +0.5
1,086,949 + ECD_01020 0.38 +0.1
1,086,949 + ECD_01020 0.38 +1.1
1,086,949 + ECD_01020 0.38 +1.2
1,087,064 - ECD_01020 0.48 -0.5
1,087,244 - ECD_01020 0.64 -0.2
1,087,245 + ECD_01020 0.64 -0.2
1,087,245 + ECD_01020 0.64 +1.5
1,087,404 + ECD_01020 0.78 +1.1
1,087,525 + ECD_01020 0.89 +2.9
1,087,600 - -1.9
1,087,665 + +1.2
1,087,667 + +0.5
1,087,668 - +2.4
1,088,194 + ECD_01021 0.42 +0.4
1,088,243 + ECD_01021 0.46 +0.8
1,088,321 + ECD_01021 0.52 +0.9
1,088,463 + ECD_01021 0.63 +0.9
1,088,473 + ECD_01021 0.64 +1.2
1,088,712 + ECD_01021 0.83 +0.5
1,089,463 - ECD_01022 0.18 -1.7
1,089,625 + ECD_01022 0.33 -0.6
1,089,853 + ECD_01022 0.54 +0.0
1,089,853 + ECD_01022 0.54 -0.5

Or see this region's nucleotide sequence