Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01020 and ECD_01021 are separated by 5 nucleotides ECD_01021 and ECD_01022 are separated by 344 nucleotides
ECD_01020: ECD_01020 - inactive ferrous ion transporter EfeUOB, at 1,086,526 to 1,087,653
_01020
ECD_01021: ECD_01021 - deferrrochelatase, periplasmic, at 1,087,659 to 1,088,930
_01021
ECD_01022: ECD_01022 - ATP-binding protein; putative PhoH family P-loop ATPase, at 1,089,275 to 1,090,339
_01022
Position (kb)
1087
1088
1089 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1086.825 kb on + strand, within ECD_01020 at 1086.940 kb on + strand, within ECD_01020 at 1086.940 kb on + strand, within ECD_01020 at 1086.949 kb on + strand, within ECD_01020 at 1086.949 kb on + strand, within ECD_01020 at 1086.949 kb on + strand, within ECD_01020 at 1087.064 kb on - strand, within ECD_01020 at 1087.244 kb on - strand, within ECD_01020 at 1087.245 kb on + strand, within ECD_01020 at 1087.245 kb on + strand, within ECD_01020 at 1087.404 kb on + strand, within ECD_01020 at 1087.525 kb on + strand, within ECD_01020 at 1087.600 kb on - strand at 1087.665 kb on + strand at 1087.667 kb on + strand at 1087.668 kb on - strand at 1088.194 kb on + strand, within ECD_01021 at 1088.243 kb on + strand, within ECD_01021 at 1088.321 kb on + strand, within ECD_01021 at 1088.463 kb on + strand, within ECD_01021 at 1088.473 kb on + strand, within ECD_01021 at 1088.712 kb on + strand, within ECD_01021 at 1089.463 kb on - strand, within ECD_01022 at 1089.625 kb on + strand, within ECD_01022 at 1089.853 kb on + strand, within ECD_01022 at 1089.853 kb on + strand, within ECD_01022
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_10 remove 1,086,825 + ECD_01020 0.27 +0.6 1,086,940 + ECD_01020 0.37 +0.6 1,086,940 + ECD_01020 0.37 +0.5 1,086,949 + ECD_01020 0.38 +0.1 1,086,949 + ECD_01020 0.38 +1.1 1,086,949 + ECD_01020 0.38 +1.2 1,087,064 - ECD_01020 0.48 -0.5 1,087,244 - ECD_01020 0.64 -0.2 1,087,245 + ECD_01020 0.64 -0.2 1,087,245 + ECD_01020 0.64 +1.5 1,087,404 + ECD_01020 0.78 +1.1 1,087,525 + ECD_01020 0.89 +2.9 1,087,600 - -1.9 1,087,665 + +1.2 1,087,667 + +0.5 1,087,668 - +2.4 1,088,194 + ECD_01021 0.42 +0.4 1,088,243 + ECD_01021 0.46 +0.8 1,088,321 + ECD_01021 0.52 +0.9 1,088,463 + ECD_01021 0.63 +0.9 1,088,473 + ECD_01021 0.64 +1.2 1,088,712 + ECD_01021 0.83 +0.5 1,089,463 - ECD_01022 0.18 -1.7 1,089,625 + ECD_01022 0.33 -0.6 1,089,853 + ECD_01022 0.54 +0.0 1,089,853 + ECD_01022 0.54 -0.5
Or see this region's nucleotide sequence