Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00971 and ECD_00972 are separated by 94 nucleotides ECD_00972 and ECD_00973 overlap by 4 nucleotides ECD_00973 and ECD_00974 are separated by 90 nucleotides ECD_00974 and ECD_t00023 are separated by 206 nucleotides ECD_t00023 and ECD_00975 are separated by 426 nucleotides
ECD_00971: ECD_00971 - 23S rRNA m(5)C1962 methyltransferase, SAM-dependent, at 1,033,868 to 1,035,058
_00971
ECD_00972: ECD_00972 - weak acylphosphatase, at 1,035,153 to 1,035,431
_00972
ECD_00973: ECD_00973 - mnm(5)-s(2)U34-tRNA 2-thiolation sulfurtransferase, at 1,035,428 to 1,035,757
_00973
ECD_00974: ECD_00974 - Modulator of FtsH protease, inner membrane protein, at 1,035,848 to 1,036,507
_00974
ECD_t00023: ECD_t00023 - tRNA-Ser, at 1,036,714 to 1,036,801
_t00023
ECD_00975: ECD_00975 - hydrogenase 1, small subunit, at 1,037,228 to 1,038,346
_00975
Position (kb)
1035
1036
1037 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1035.169 kb on + strand at 1035.935 kb on - strand, within ECD_00974 at 1035.937 kb on - strand, within ECD_00974 at 1035.937 kb on - strand, within ECD_00974 at 1036.141 kb on - strand, within ECD_00974 at 1036.141 kb on - strand, within ECD_00974 at 1036.435 kb on - strand, within ECD_00974 at 1036.439 kb on - strand, within ECD_00974 at 1036.463 kb on - strand at 1036.475 kb on - strand at 1036.475 kb on - strand at 1036.475 kb on - strand at 1036.555 kb on - strand at 1036.645 kb on - strand at 1036.694 kb on - strand at 1036.694 kb on - strand at 1036.711 kb on - strand at 1036.711 kb on - strand at 1036.711 kb on - strand at 1036.995 kb on - strand at 1037.070 kb on + strand at 1037.076 kb on + strand at 1037.076 kb on + strand at 1037.297 kb on + strand at 1037.298 kb on - strand at 1037.391 kb on + strand, within ECD_00975 at 1037.501 kb on - strand, within ECD_00975
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_10 remove 1,035,169 + -0.6 1,035,935 - ECD_00974 0.13 -1.8 1,035,937 - ECD_00974 0.13 -1.0 1,035,937 - ECD_00974 0.13 -0.8 1,036,141 - ECD_00974 0.44 -0.6 1,036,141 - ECD_00974 0.44 -1.8 1,036,435 - ECD_00974 0.89 -3.1 1,036,439 - ECD_00974 0.90 -2.7 1,036,463 - -0.8 1,036,475 - -1.3 1,036,475 - -1.0 1,036,475 - -1.6 1,036,555 - -0.0 1,036,645 - -0.9 1,036,694 - +2.9 1,036,694 - +2.7 1,036,711 - +2.8 1,036,711 - +2.8 1,036,711 - +2.6 1,036,995 - +0.1 1,037,070 + +0.2 1,037,076 + -2.2 1,037,076 + -1.3 1,037,297 + -0.7 1,037,298 - -0.0 1,037,391 + ECD_00975 0.15 -1.6 1,037,501 - ECD_00975 0.24 +0.8
Or see this region's nucleotide sequence