Strain Fitness in Escherichia coli BL21 around ECD_00974

Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00971 and ECD_00972 are separated by 94 nucleotidesECD_00972 and ECD_00973 overlap by 4 nucleotidesECD_00973 and ECD_00974 are separated by 90 nucleotidesECD_00974 and ECD_t00023 are separated by 206 nucleotidesECD_t00023 and ECD_00975 are separated by 426 nucleotides ECD_00971: ECD_00971 - 23S rRNA m(5)C1962 methyltransferase, SAM-dependent, at 1,033,868 to 1,035,058 _00971 ECD_00972: ECD_00972 - weak acylphosphatase, at 1,035,153 to 1,035,431 _00972 ECD_00973: ECD_00973 - mnm(5)-s(2)U34-tRNA 2-thiolation sulfurtransferase, at 1,035,428 to 1,035,757 _00973 ECD_00974: ECD_00974 - Modulator of FtsH protease, inner membrane protein, at 1,035,848 to 1,036,507 _00974 ECD_t00023: ECD_t00023 - tRNA-Ser, at 1,036,714 to 1,036,801 _t00023 ECD_00975: ECD_00975 - hydrogenase 1, small subunit, at 1,037,228 to 1,038,346 _00975 Position (kb) 1035 1036 1037Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1035.169 kb on + strandat 1035.935 kb on - strand, within ECD_00974at 1035.937 kb on - strand, within ECD_00974at 1035.937 kb on - strand, within ECD_00974at 1036.141 kb on - strand, within ECD_00974at 1036.141 kb on - strand, within ECD_00974at 1036.435 kb on - strand, within ECD_00974at 1036.439 kb on - strand, within ECD_00974at 1036.463 kb on - strandat 1036.475 kb on - strandat 1036.475 kb on - strandat 1036.475 kb on - strandat 1036.555 kb on - strandat 1036.645 kb on - strandat 1036.694 kb on - strandat 1036.694 kb on - strandat 1036.711 kb on - strandat 1036.711 kb on - strandat 1036.711 kb on - strandat 1036.995 kb on - strandat 1037.070 kb on + strandat 1037.076 kb on + strandat 1037.076 kb on + strandat 1037.297 kb on + strandat 1037.298 kb on - strandat 1037.391 kb on + strand, within ECD_00975at 1037.501 kb on - strand, within ECD_00975

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_10
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1,035,169 + -0.6
1,035,935 - ECD_00974 0.13 -1.8
1,035,937 - ECD_00974 0.13 -1.0
1,035,937 - ECD_00974 0.13 -0.8
1,036,141 - ECD_00974 0.44 -0.6
1,036,141 - ECD_00974 0.44 -1.8
1,036,435 - ECD_00974 0.89 -3.1
1,036,439 - ECD_00974 0.90 -2.7
1,036,463 - -0.8
1,036,475 - -1.3
1,036,475 - -1.0
1,036,475 - -1.6
1,036,555 - -0.0
1,036,645 - -0.9
1,036,694 - +2.9
1,036,694 - +2.7
1,036,711 - +2.8
1,036,711 - +2.8
1,036,711 - +2.6
1,036,995 - +0.1
1,037,070 + +0.2
1,037,076 + -2.2
1,037,076 + -1.3
1,037,297 + -0.7
1,037,298 - -0.0
1,037,391 + ECD_00975 0.15 -1.6
1,037,501 - ECD_00975 0.24 +0.8

Or see this region's nucleotide sequence