Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00966 and ECD_00967 are separated by 31 nucleotides ECD_00967 and ECD_00968 are separated by 95 nucleotides ECD_00968 and ECD_00969 are separated by 172 nucleotides
ECD_00966: ECD_00966 - DNA helicase IV, at 1,029,560 to 1,031,614
_00966
ECD_00967: ECD_00967 - methylglyoxal synthase, at 1,031,646 to 1,032,104
_00967
ECD_00968: ECD_00968 - UPF0319 family protein, at 1,032,200 to 1,032,862
_00968
ECD_00969: ECD_00969 - putative CoA-binding protein, at 1,033,035 to 1,033,448
_00969
Position (kb)
1031
1032
1033 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1030.723 kb on + strand, within ECD_00966 at 1030.723 kb on + strand, within ECD_00966 at 1030.858 kb on + strand, within ECD_00966 at 1031.071 kb on + strand, within ECD_00966 at 1031.498 kb on + strand at 1031.957 kb on + strand, within ECD_00967 at 1031.977 kb on + strand, within ECD_00967 at 1031.983 kb on - strand, within ECD_00967 at 1031.983 kb on - strand, within ECD_00967 at 1032.066 kb on - strand at 1032.082 kb on - strand at 1032.110 kb on - strand at 1032.117 kb on + strand at 1032.143 kb on - strand at 1032.143 kb on - strand at 1032.349 kb on + strand, within ECD_00968 at 1032.632 kb on - strand, within ECD_00968 at 1032.632 kb on - strand, within ECD_00968 at 1032.633 kb on + strand, within ECD_00968 at 1032.633 kb on + strand, within ECD_00968 at 1032.634 kb on - strand, within ECD_00968 at 1032.634 kb on - strand, within ECD_00968 at 1032.974 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_10 remove 1,030,723 + ECD_00966 0.57 -0.1 1,030,723 + ECD_00966 0.57 +1.3 1,030,858 + ECD_00966 0.63 +0.3 1,031,071 + ECD_00966 0.74 -0.3 1,031,498 + -0.2 1,031,957 + ECD_00967 0.68 -0.7 1,031,977 + ECD_00967 0.72 -2.0 1,031,983 - ECD_00967 0.73 -0.4 1,031,983 - ECD_00967 0.73 -1.8 1,032,066 - -1.0 1,032,082 - +0.3 1,032,110 - -0.0 1,032,117 + -1.1 1,032,143 - +0.2 1,032,143 - -1.4 1,032,349 + ECD_00968 0.22 -2.4 1,032,632 - ECD_00968 0.65 -0.9 1,032,632 - ECD_00968 0.65 -0.8 1,032,633 + ECD_00968 0.65 +1.2 1,032,633 + ECD_00968 0.65 -0.8 1,032,634 - ECD_00968 0.65 -0.3 1,032,634 - ECD_00968 0.65 -0.6 1,032,974 + +2.0
Or see this region's nucleotide sequence