Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00911 and ECD_00912 are separated by 70 nucleotides ECD_00912 and ECD_00913 are separated by 168 nucleotides
ECD_00911: ECD_00911 - 3-phosphoserine/phosphohydroxythreonine aminotransferase, at 962,743 to 963,831
_00911
ECD_00912: ECD_00912 - 5-enolpyruvylshikimate-3-phosphate synthetase, at 963,902 to 965,185
_00912
ECD_00913: ECD_00913 - putative peptidase-related chaperone, at 965,354 to 966,118
_00913
Position (kb) 963
964
965
966 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 962.941 kb on + strand, within ECD_00911 at 962.948 kb on + strand, within ECD_00911 at 962.948 kb on + strand, within ECD_00911 at 963.028 kb on + strand, within ECD_00911 at 963.175 kb on + strand, within ECD_00911 at 963.177 kb on + strand, within ECD_00911 at 963.178 kb on - strand, within ECD_00911 at 963.314 kb on + strand, within ECD_00911 at 963.314 kb on + strand, within ECD_00911 at 963.315 kb on - strand, within ECD_00911 at 963.481 kb on + strand, within ECD_00911 at 963.482 kb on - strand, within ECD_00911 at 963.482 kb on - strand, within ECD_00911 at 963.569 kb on + strand, within ECD_00911 at 963.569 kb on + strand, within ECD_00911 at 963.569 kb on + strand, within ECD_00911 at 963.571 kb on + strand, within ECD_00911 at 963.759 kb on + strand at 963.919 kb on - strand at 963.950 kb on - strand at 964.071 kb on + strand, within ECD_00912 at 964.091 kb on + strand, within ECD_00912 at 964.093 kb on + strand, within ECD_00912 at 964.261 kb on + strand, within ECD_00912 at 964.459 kb on + strand, within ECD_00912 at 964.460 kb on - strand, within ECD_00912 at 964.471 kb on + strand, within ECD_00912 at 964.610 kb on + strand, within ECD_00912 at 964.611 kb on - strand, within ECD_00912 at 964.781 kb on - strand, within ECD_00912 at 964.904 kb on + strand, within ECD_00912 at 965.045 kb on + strand, within ECD_00912 at 965.045 kb on + strand, within ECD_00912 at 965.095 kb on + strand at 965.147 kb on + strand at 965.570 kb on + strand, within ECD_00913 at 965.614 kb on + strand, within ECD_00913 at 965.615 kb on - strand, within ECD_00913 at 965.637 kb on - strand, within ECD_00913 at 965.645 kb on + strand, within ECD_00913 at 965.645 kb on + strand, within ECD_00913 at 965.645 kb on + strand, within ECD_00913 at 965.646 kb on - strand, within ECD_00913 at 965.647 kb on + strand, within ECD_00913 at 965.648 kb on - strand, within ECD_00913 at 965.807 kb on + strand, within ECD_00913
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_10 remove 962,941 + ECD_00911 0.18 +0.2 962,948 + ECD_00911 0.19 +0.8 962,948 + ECD_00911 0.19 -0.5 963,028 + ECD_00911 0.26 +0.6 963,175 + ECD_00911 0.40 +0.3 963,177 + ECD_00911 0.40 +0.6 963,178 - ECD_00911 0.40 -1.8 963,314 + ECD_00911 0.52 -0.2 963,314 + ECD_00911 0.52 -0.7 963,315 - ECD_00911 0.53 -0.1 963,481 + ECD_00911 0.68 +0.3 963,482 - ECD_00911 0.68 -0.9 963,482 - ECD_00911 0.68 -2.1 963,569 + ECD_00911 0.76 +0.9 963,569 + ECD_00911 0.76 +1.1 963,569 + ECD_00911 0.76 +0.9 963,571 + ECD_00911 0.76 -0.7 963,759 + +0.9 963,919 - -0.3 963,950 - -0.9 964,071 + ECD_00912 0.13 -2.5 964,091 + ECD_00912 0.15 +0.1 964,093 + ECD_00912 0.15 -0.7 964,261 + ECD_00912 0.28 +0.7 964,459 + ECD_00912 0.43 -0.8 964,460 - ECD_00912 0.43 -0.9 964,471 + ECD_00912 0.44 -3.0 964,610 + ECD_00912 0.55 -0.5 964,611 - ECD_00912 0.55 +0.1 964,781 - ECD_00912 0.68 +1.1 964,904 + ECD_00912 0.78 -1.8 965,045 + ECD_00912 0.89 -1.5 965,045 + ECD_00912 0.89 -2.3 965,095 + -1.7 965,147 + -1.4 965,570 + ECD_00913 0.28 -0.3 965,614 + ECD_00913 0.34 -1.1 965,615 - ECD_00913 0.34 -0.7 965,637 - ECD_00913 0.37 -0.5 965,645 + ECD_00913 0.38 -1.6 965,645 + ECD_00913 0.38 +1.9 965,645 + ECD_00913 0.38 -0.6 965,646 - ECD_00913 0.38 -1.1 965,647 + ECD_00913 0.38 +0.5 965,648 - ECD_00913 0.38 -1.7 965,807 + ECD_00913 0.59 +2.3
Or see this region's nucleotide sequence