Strain Fitness in Escherichia coli BL21 around ECD_00910

Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00909 and ECD_00910 are separated by 129 nucleotidesECD_00910 and ECD_00911 are separated by 198 nucleotides ECD_00909: ECD_00909 - ribosomal protein S12 methylthiotransferase accessory factor, at 959,962 to 961,722 _00909 ECD_00910: ECD_00910 - UPF0702 family putative inner membrane protein, at 961,852 to 962,544 _00910 ECD_00911: ECD_00911 - 3-phosphoserine/phosphohydroxythreonine aminotransferase, at 962,743 to 963,831 _00911 Position (kb) 961 962 963Strain fitness (log2 ratio) -3 -2 -1 0 1at 961.177 kb on - strand, within ECD_00909at 961.177 kb on - strand, within ECD_00909at 961.191 kb on - strand, within ECD_00909at 961.220 kb on + strand, within ECD_00909at 961.581 kb on + strandat 961.759 kb on + strandat 961.768 kb on + strandat 961.783 kb on - strandat 961.922 kb on + strand, within ECD_00910at 961.926 kb on + strand, within ECD_00910at 961.943 kb on + strand, within ECD_00910at 962.056 kb on + strand, within ECD_00910at 962.082 kb on - strand, within ECD_00910at 962.086 kb on - strand, within ECD_00910at 962.097 kb on + strand, within ECD_00910at 962.261 kb on + strand, within ECD_00910at 962.261 kb on + strand, within ECD_00910at 962.262 kb on - strand, within ECD_00910at 962.294 kb on + strand, within ECD_00910at 962.294 kb on + strand, within ECD_00910at 962.369 kb on + strand, within ECD_00910at 962.391 kb on + strand, within ECD_00910at 962.429 kb on - strand, within ECD_00910at 962.437 kb on - strand, within ECD_00910at 962.571 kb on + strandat 962.681 kb on + strandat 962.682 kb on - strandat 962.684 kb on + strandat 962.715 kb on + strandat 962.715 kb on + strandat 962.719 kb on - strandat 962.719 kb on - strandat 962.719 kb on - strandat 962.783 kb on + strandat 962.841 kb on + strandat 962.842 kb on - strandat 962.941 kb on + strand, within ECD_00911at 962.948 kb on + strand, within ECD_00911at 962.948 kb on + strand, within ECD_00911at 963.028 kb on + strand, within ECD_00911at 963.175 kb on + strand, within ECD_00911at 963.177 kb on + strand, within ECD_00911at 963.178 kb on - strand, within ECD_00911at 963.314 kb on + strand, within ECD_00911at 963.314 kb on + strand, within ECD_00911at 963.315 kb on - strand, within ECD_00911at 963.481 kb on + strand, within ECD_00911at 963.482 kb on - strand, within ECD_00911at 963.482 kb on - strand, within ECD_00911

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_10
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961,177 - ECD_00909 0.69 -1.0
961,177 - ECD_00909 0.69 -0.6
961,191 - ECD_00909 0.70 +0.4
961,220 + ECD_00909 0.71 -2.0
961,581 + -1.9
961,759 + +0.1
961,768 + -0.9
961,783 - -0.9
961,922 + ECD_00910 0.10 -0.4
961,926 + ECD_00910 0.11 -1.0
961,943 + ECD_00910 0.13 -0.8
962,056 + ECD_00910 0.29 +0.6
962,082 - ECD_00910 0.33 -2.8
962,086 - ECD_00910 0.34 -1.2
962,097 + ECD_00910 0.35 +0.3
962,261 + ECD_00910 0.59 -0.1
962,261 + ECD_00910 0.59 +1.1
962,262 - ECD_00910 0.59 -0.6
962,294 + ECD_00910 0.64 +0.2
962,294 + ECD_00910 0.64 -1.3
962,369 + ECD_00910 0.75 +0.3
962,391 + ECD_00910 0.78 +1.1
962,429 - ECD_00910 0.83 +0.5
962,437 - ECD_00910 0.84 -2.1
962,571 + -0.9
962,681 + +0.1
962,682 - -0.8
962,684 + +0.6
962,715 + +0.2
962,715 + +1.2
962,719 - -0.5
962,719 - -2.0
962,719 - -0.0
962,783 + +0.8
962,841 + +1.5
962,842 - -1.9
962,941 + ECD_00911 0.18 +0.1
962,948 + ECD_00911 0.19 +0.8
962,948 + ECD_00911 0.19 -0.5
963,028 + ECD_00911 0.26 +0.6
963,175 + ECD_00911 0.40 +0.3
963,177 + ECD_00911 0.40 +0.6
963,178 - ECD_00911 0.40 -1.8
963,314 + ECD_00911 0.52 -0.2
963,314 + ECD_00911 0.52 -0.7
963,315 - ECD_00911 0.53 -0.1
963,481 + ECD_00911 0.68 +0.3
963,482 - ECD_00911 0.68 -0.9
963,482 - ECD_00911 0.68 -2.1

Or see this region's nucleotide sequence