Strain Fitness in Escherichia coli BL21 around ECD_00884

Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00883 and ECD_00884 overlap by 4 nucleotidesECD_00884 and ECD_00885 are separated by 72 nucleotidesECD_00885 and ECD_00886 are separated by 322 nucleotidesECD_00886 and ECD_00887 are separated by 30 nucleotides ECD_00883: ECD_00883 - macrolide transporter membrane fusion protein (MFP) component, at 923,938 to 925,053 _00883 ECD_00884: ECD_00884 - macrolide ABC transporter peremase/ATPase, at 925,050 to 926,996 _00884 ECD_00885: ECD_00885 - inhibitor of DNA replication, cold shock protein-like protein, at 927,069 to 927,293 _00885 ECD_00886: ECD_00886 - regulatory protein for ClpA substrate specificity, at 927,616 to 927,936 _00886 ECD_00887: ECD_00887 - ATPase and specificity subunit of ClpA-ClpP ATP-dependent serine protease, chaperone activity, at 927,967 to 930,243 _00887 Position (kb) 925 926 927Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 924.725 kb on + strand, within ECD_00883at 924.763 kb on + strand, within ECD_00883at 924.810 kb on + strand, within ECD_00883at 924.906 kb on + strand, within ECD_00883at 924.924 kb on + strand, within ECD_00883at 924.924 kb on + strand, within ECD_00883at 924.924 kb on + strand, within ECD_00883at 924.967 kb on - strandat 925.079 kb on + strandat 925.143 kb on + strandat 925.387 kb on - strand, within ECD_00884at 925.468 kb on - strand, within ECD_00884at 925.468 kb on - strand, within ECD_00884at 925.635 kb on - strand, within ECD_00884at 925.868 kb on - strand, within ECD_00884at 925.967 kb on + strand, within ECD_00884at 925.967 kb on + strand, within ECD_00884at 925.982 kb on + strand, within ECD_00884at 925.983 kb on - strand, within ECD_00884at 926.028 kb on + strand, within ECD_00884at 926.046 kb on + strand, within ECD_00884at 926.127 kb on + strand, within ECD_00884at 926.129 kb on + strand, within ECD_00884at 926.129 kb on + strand, within ECD_00884at 926.188 kb on - strand, within ECD_00884at 926.219 kb on + strand, within ECD_00884at 926.267 kb on + strand, within ECD_00884at 926.333 kb on + strand, within ECD_00884at 926.390 kb on + strand, within ECD_00884at 926.415 kb on + strand, within ECD_00884at 926.606 kb on + strand, within ECD_00884at 926.607 kb on - strand, within ECD_00884at 926.612 kb on - strand, within ECD_00884at 926.668 kb on + strand, within ECD_00884at 926.668 kb on + strand, within ECD_00884at 926.675 kb on + strand, within ECD_00884at 926.678 kb on + strand, within ECD_00884at 926.678 kb on + strand, within ECD_00884at 926.678 kb on + strand, within ECD_00884at 926.678 kb on + strand, within ECD_00884at 926.731 kb on + strand, within ECD_00884at 926.813 kb on - strandat 926.974 kb on + strandat 927.104 kb on + strand, within ECD_00885at 927.275 kb on + strandat 927.276 kb on - strandat 927.319 kb on + strandat 927.380 kb on - strandat 927.385 kb on + strandat 927.518 kb on + strandat 927.518 kb on + strandat 927.518 kb on + strandat 927.522 kb on + strandat 927.522 kb on + strandat 927.522 kb on + strandat 927.522 kb on + strandat 927.522 kb on + strandat 927.522 kb on + strandat 927.522 kb on + strandat 927.522 kb on + strandat 927.522 kb on + strandat 927.526 kb on + strandat 927.538 kb on + strandat 927.538 kb on + strandat 927.555 kb on + strandat 927.607 kb on + strandat 927.693 kb on + strand, within ECD_00886at 927.693 kb on + strand, within ECD_00886at 927.693 kb on + strand, within ECD_00886at 927.693 kb on + strand, within ECD_00886at 927.693 kb on + strand, within ECD_00886at 927.699 kb on + strand, within ECD_00886at 927.710 kb on + strand, within ECD_00886at 927.779 kb on + strand, within ECD_00886at 927.779 kb on + strand, within ECD_00886

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_10
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924,725 + ECD_00883 0.71 -0.0
924,763 + ECD_00883 0.74 -0.3
924,810 + ECD_00883 0.78 +0.8
924,906 + ECD_00883 0.87 +0.3
924,924 + ECD_00883 0.88 +1.2
924,924 + ECD_00883 0.88 +1.7
924,924 + ECD_00883 0.88 +1.5
924,967 - -2.4
925,079 + +1.2
925,143 + +2.1
925,387 - ECD_00884 0.17 -1.5
925,468 - ECD_00884 0.21 -0.4
925,468 - ECD_00884 0.21 -1.0
925,635 - ECD_00884 0.30 -0.6
925,868 - ECD_00884 0.42 -1.4
925,967 + ECD_00884 0.47 -0.3
925,967 + ECD_00884 0.47 +1.0
925,982 + ECD_00884 0.48 -1.1
925,983 - ECD_00884 0.48 -0.2
926,028 + ECD_00884 0.50 -0.7
926,046 + ECD_00884 0.51 -0.3
926,127 + ECD_00884 0.55 -0.7
926,129 + ECD_00884 0.55 +0.7
926,129 + ECD_00884 0.55 -0.9
926,188 - ECD_00884 0.58 -1.7
926,219 + ECD_00884 0.60 +1.6
926,267 + ECD_00884 0.63 +0.1
926,333 + ECD_00884 0.66 +0.4
926,390 + ECD_00884 0.69 -0.7
926,415 + ECD_00884 0.70 +0.5
926,606 + ECD_00884 0.80 +0.2
926,607 - ECD_00884 0.80 -1.5
926,612 - ECD_00884 0.80 -2.8
926,668 + ECD_00884 0.83 -0.1
926,668 + ECD_00884 0.83 +0.7
926,675 + ECD_00884 0.83 -0.0
926,678 + ECD_00884 0.84 -0.0
926,678 + ECD_00884 0.84 +1.3
926,678 + ECD_00884 0.84 +0.3
926,678 + ECD_00884 0.84 +1.3
926,731 + ECD_00884 0.86 +1.9
926,813 - -1.8
926,974 + +0.7
927,104 + ECD_00885 0.16 -1.1
927,275 + -0.6
927,276 - +2.1
927,319 + +0.1
927,380 - -0.1
927,385 + +0.4
927,518 + -0.2
927,518 + +0.7
927,518 + -0.2
927,522 + -0.6
927,522 + -0.2
927,522 + +0.4
927,522 + +0.9
927,522 + -0.3
927,522 + +0.5
927,522 + -0.4
927,522 + +0.8
927,522 + +0.5
927,526 + +0.1
927,538 + +0.1
927,538 + +0.2
927,555 + +1.1
927,607 + -1.0
927,693 + ECD_00886 0.24 -0.7
927,693 + ECD_00886 0.24 +0.4
927,693 + ECD_00886 0.24 +0.3
927,693 + ECD_00886 0.24 +0.1
927,693 + ECD_00886 0.24 +0.4
927,699 + ECD_00886 0.26 -0.8
927,710 + ECD_00886 0.29 -0.5
927,779 + ECD_00886 0.51 +0.6
927,779 + ECD_00886 0.51 +1.1

Or see this region's nucleotide sequence