Strain Fitness in Escherichia coli BL21 around ECD_00876

Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00875 and ECD_00876 are separated by 36 nucleotidesECD_00876 and ECD_00877 are separated by 132 nucleotides ECD_00875: ECD_00875 - L-allo-threonine aldolase, PLP-dependent, at 912,997 to 913,998 _00875 ECD_00876: ECD_00876 - pyruvate dehydrogenase, thiamine triphosphate-binding, FAD-binding, at 914,035 to 915,753 _00876 ECD_00877: ECD_00877 - HCP oxidoreductase, NADH-dependent, at 915,886 to 916,854 _00877 Position (kb) 914 915 916Strain fitness (log2 ratio) -2 -1 0 1 2at 913.122 kb on - strand, within ECD_00875at 913.171 kb on - strand, within ECD_00875at 913.171 kb on - strand, within ECD_00875at 913.171 kb on - strand, within ECD_00875at 913.171 kb on - strand, within ECD_00875at 913.171 kb on - strand, within ECD_00875at 913.173 kb on + strand, within ECD_00875at 913.173 kb on + strand, within ECD_00875at 913.174 kb on - strand, within ECD_00875at 913.267 kb on - strand, within ECD_00875at 913.280 kb on + strand, within ECD_00875at 913.281 kb on - strand, within ECD_00875at 913.281 kb on - strand, within ECD_00875at 913.357 kb on - strand, within ECD_00875at 913.439 kb on + strand, within ECD_00875at 913.469 kb on + strand, within ECD_00875at 913.770 kb on + strand, within ECD_00875at 913.771 kb on - strand, within ECD_00875at 913.772 kb on + strand, within ECD_00875at 913.772 kb on + strand, within ECD_00875at 913.773 kb on - strand, within ECD_00875at 913.773 kb on - strand, within ECD_00875at 913.891 kb on - strand, within ECD_00875at 914.013 kb on - strandat 914.013 kb on - strandat 914.106 kb on + strandat 914.106 kb on + strandat 914.107 kb on - strandat 914.109 kb on - strandat 914.115 kb on + strandat 914.309 kb on - strand, within ECD_00876at 914.581 kb on + strand, within ECD_00876at 914.631 kb on + strand, within ECD_00876at 915.018 kb on - strand, within ECD_00876at 915.182 kb on - strand, within ECD_00876at 915.334 kb on + strand, within ECD_00876at 915.394 kb on + strand, within ECD_00876at 915.511 kb on + strand, within ECD_00876at 915.731 kb on + strandat 915.879 kb on - strandat 915.985 kb on - strand, within ECD_00877at 915.986 kb on + strand, within ECD_00877at 915.987 kb on - strand, within ECD_00877at 916.237 kb on - strand, within ECD_00877at 916.276 kb on + strand, within ECD_00877at 916.276 kb on + strand, within ECD_00877at 916.372 kb on - strand, within ECD_00877at 916.393 kb on - strand, within ECD_00877at 916.543 kb on - strand, within ECD_00877at 916.574 kb on + strand, within ECD_00877at 916.652 kb on + strand, within ECD_00877at 916.653 kb on - strand, within ECD_00877at 916.685 kb on + strand, within ECD_00877at 916.686 kb on - strand, within ECD_00877at 916.751 kb on + strand, within ECD_00877at 916.752 kb on - strand, within ECD_00877

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_10
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913,122 - ECD_00875 0.12 +0.8
913,171 - ECD_00875 0.17 -0.7
913,171 - ECD_00875 0.17 +0.7
913,171 - ECD_00875 0.17 -0.0
913,171 - ECD_00875 0.17 -0.0
913,171 - ECD_00875 0.17 -0.0
913,173 + ECD_00875 0.18 -0.2
913,173 + ECD_00875 0.18 +0.6
913,174 - ECD_00875 0.18 +0.3
913,267 - ECD_00875 0.27 +0.6
913,280 + ECD_00875 0.28 -0.6
913,281 - ECD_00875 0.28 +0.7
913,281 - ECD_00875 0.28 -0.4
913,357 - ECD_00875 0.36 -0.7
913,439 + ECD_00875 0.44 +2.4
913,469 + ECD_00875 0.47 -2.4
913,770 + ECD_00875 0.77 -0.7
913,771 - ECD_00875 0.77 -1.7
913,772 + ECD_00875 0.77 +1.1
913,772 + ECD_00875 0.77 -0.6
913,773 - ECD_00875 0.77 +0.5
913,773 - ECD_00875 0.77 +0.1
913,891 - ECD_00875 0.89 +0.1
914,013 - +0.8
914,013 - -0.0
914,106 + +2.1
914,106 + +1.1
914,107 - -0.1
914,109 - -1.5
914,115 + -1.7
914,309 - ECD_00876 0.16 +0.8
914,581 + ECD_00876 0.32 -0.4
914,631 + ECD_00876 0.35 -0.2
915,018 - ECD_00876 0.57 -2.2
915,182 - ECD_00876 0.67 -1.2
915,334 + ECD_00876 0.76 +0.4
915,394 + ECD_00876 0.79 +0.0
915,511 + ECD_00876 0.86 +1.3
915,731 + -0.1
915,879 - -0.9
915,985 - ECD_00877 0.10 +0.1
915,986 + ECD_00877 0.10 -0.8
915,987 - ECD_00877 0.10 +0.2
916,237 - ECD_00877 0.36 -0.4
916,276 + ECD_00877 0.40 -0.8
916,276 + ECD_00877 0.40 +0.3
916,372 - ECD_00877 0.50 -0.2
916,393 - ECD_00877 0.52 -1.0
916,543 - ECD_00877 0.68 -0.3
916,574 + ECD_00877 0.71 +0.3
916,652 + ECD_00877 0.79 -0.2
916,653 - ECD_00877 0.79 -0.5
916,685 + ECD_00877 0.82 -0.8
916,686 - ECD_00877 0.83 +1.2
916,751 + ECD_00877 0.89 -0.8
916,752 - ECD_00877 0.89 -0.7

Or see this region's nucleotide sequence