Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00813 and ECD_00814 are separated by 179 nucleotides ECD_00814 and ECD_00815 are separated by 108 nucleotides ECD_00815 and ECD_00816 are separated by 233 nucleotides ECD_00816 and ECD_00817 are separated by 79 nucleotides
ECD_00813: ECD_00813 - transcriptional regulator of csgD and ybiJI; autoregulator, at 871,342 to 871,878
_00813
ECD_00814: ECD_00814 - hypothetical protein, at 872,058 to 872,390
_00814
ECD_00815: ECD_00815 - integrase for prophage, at 872,499 to 873,443
_00815
ECD_00816: ECD_00816 - hypothetical protein, at 873,677 to 873,829
_00816
ECD_00817: ECD_00817 - Repressor protein, at 873,909 to 874,472
_00817
Position (kb) 872
873
874 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 871.552 kb on + strand, within ECD_00813 at 871.661 kb on - strand, within ECD_00813 at 871.915 kb on - strand at 872.083 kb on - strand at 872.101 kb on - strand, within ECD_00814 at 872.424 kb on + strand at 872.925 kb on + strand, within ECD_00815 at 873.096 kb on + strand, within ECD_00815 at 873.096 kb on + strand, within ECD_00815 at 873.097 kb on - strand, within ECD_00815 at 873.097 kb on - strand, within ECD_00815 at 873.161 kb on - strand, within ECD_00815 at 873.161 kb on - strand, within ECD_00815 at 873.213 kb on + strand, within ECD_00815 at 873.303 kb on + strand, within ECD_00815 at 873.304 kb on - strand, within ECD_00815 at 873.316 kb on - strand, within ECD_00815 at 873.437 kb on + strand at 873.456 kb on - strand at 873.590 kb on - strand at 873.590 kb on - strand at 873.830 kb on - strand at 873.830 kb on - strand at 873.834 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_10 remove 871,552 + ECD_00813 0.39 +0.8 871,661 - ECD_00813 0.59 -2.3 871,915 - -1.0 872,083 - +0.4 872,101 - ECD_00814 0.13 -0.4 872,424 + -0.3 872,925 + ECD_00815 0.45 -3.1 873,096 + ECD_00815 0.63 -1.5 873,096 + ECD_00815 0.63 +0.5 873,097 - ECD_00815 0.63 -0.5 873,097 - ECD_00815 0.63 -0.4 873,161 - ECD_00815 0.70 -1.1 873,161 - ECD_00815 0.70 -0.5 873,213 + ECD_00815 0.76 -0.3 873,303 + ECD_00815 0.85 -1.6 873,304 - ECD_00815 0.85 -1.6 873,316 - ECD_00815 0.86 -2.5 873,437 + -0.4 873,456 - -0.9 873,590 - +0.5 873,590 - -0.7 873,830 - -2.4 873,830 - -2.5 873,834 - -2.8
Or see this region's nucleotide sequence