Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00780 and ECD_00781 are separated by 352 nucleotides ECD_00781 and ECD_00782 are separated by 48 nucleotides ECD_00782 and ECD_00783 are separated by 73 nucleotides ECD_00783 and ECD_04299 overlap by 72 nucleotides ECD_04299 and ECD_00784 are separated by 185 nucleotides
ECD_00780: ECD_00780 - threonine and homoserine efflux system, at 833,202 to 834,089
_00780
ECD_00781: ECD_00781 - outer membrane protein X, at 834,442 to 834,957
_00781
ECD_00782: ECD_00782 - OPG biosynthetic transmembrane phosphoethanolamine transferase, at 835,006 to 836,589
_00782
ECD_00783: ECD_00783 - hypothetical protein, at 836,663 to 836,932
_00783
ECD_04299: ECD_04299 - Mn(2)-response protein, MntR-repressed, at 836,861 to 836,989
_04299
ECD_00784: ECD_00784 - Mn(2+)-responsive manganese regulon transcriptional regulator, at 837,175 to 837,642
_00784
Position (kb) 835
836
837 Strain fitness (log2 ratio) -2
-1
0
1
2 at 834.043 kb on - strand at 834.049 kb on - strand at 834.049 kb on - strand at 834.072 kb on - strand at 834.106 kb on - strand at 834.116 kb on - strand at 834.272 kb on + strand at 834.272 kb on + strand at 834.519 kb on + strand, within ECD_00781 at 834.519 kb on + strand, within ECD_00781 at 834.679 kb on + strand, within ECD_00781 at 834.697 kb on + strand, within ECD_00781 at 834.755 kb on + strand, within ECD_00781 at 834.774 kb on + strand, within ECD_00781 at 834.802 kb on + strand, within ECD_00781 at 834.835 kb on + strand, within ECD_00781 at 834.955 kb on + strand at 834.955 kb on + strand at 835.080 kb on - strand at 835.106 kb on - strand at 835.107 kb on + strand at 835.108 kb on - strand at 835.263 kb on - strand, within ECD_00782 at 835.335 kb on - strand, within ECD_00782 at 835.416 kb on - strand, within ECD_00782 at 835.421 kb on + strand, within ECD_00782 at 835.508 kb on - strand, within ECD_00782 at 835.591 kb on - strand, within ECD_00782 at 835.623 kb on - strand, within ECD_00782 at 835.934 kb on + strand, within ECD_00782 at 835.935 kb on - strand, within ECD_00782 at 835.935 kb on - strand, within ECD_00782 at 836.590 kb on - strand at 836.602 kb on + strand at 836.696 kb on + strand, within ECD_00783 at 836.697 kb on - strand, within ECD_00783 at 836.697 kb on - strand, within ECD_00783 at 836.697 kb on - strand, within ECD_00783 at 836.716 kb on + strand, within ECD_00783 at 836.867 kb on - strand at 836.918 kb on - strand at 836.918 kb on - strand at 836.918 kb on - strand at 836.942 kb on - strand, within ECD_04299 at 836.957 kb on - strand, within ECD_04299 at 836.969 kb on - strand, within ECD_04299 at 836.969 kb on - strand, within ECD_04299 at 836.990 kb on - strand at 837.008 kb on - strand at 837.040 kb on - strand at 837.040 kb on - strand at 837.044 kb on - strand at 837.050 kb on - strand at 837.052 kb on - strand at 837.075 kb on - strand at 837.144 kb on + strand at 837.144 kb on + strand at 837.148 kb on + strand at 837.148 kb on + strand at 837.148 kb on + strand at 837.149 kb on - strand at 837.149 kb on - strand at 837.149 kb on - strand at 837.160 kb on + strand at 837.160 kb on + strand at 837.161 kb on - strand at 837.296 kb on - strand, within ECD_00784
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_10 remove 834,043 - -0.5 834,049 - +0.1 834,049 - -0.3 834,072 - +0.7 834,106 - +0.6 834,116 - +0.7 834,272 + +0.9 834,272 + +0.9 834,519 + ECD_00781 0.15 +0.8 834,519 + ECD_00781 0.15 +1.4 834,679 + ECD_00781 0.46 +1.6 834,697 + ECD_00781 0.49 +1.9 834,755 + ECD_00781 0.61 +1.9 834,774 + ECD_00781 0.64 +1.0 834,802 + ECD_00781 0.70 +1.3 834,835 + ECD_00781 0.76 +1.1 834,955 + +1.7 834,955 + +2.1 835,080 - -0.4 835,106 - -2.4 835,107 + -0.4 835,108 - +1.0 835,263 - ECD_00782 0.16 -0.8 835,335 - ECD_00782 0.21 -1.5 835,416 - ECD_00782 0.26 -0.4 835,421 + ECD_00782 0.26 -1.7 835,508 - ECD_00782 0.32 -0.7 835,591 - ECD_00782 0.37 -1.1 835,623 - ECD_00782 0.39 +1.0 835,934 + ECD_00782 0.59 +2.4 835,935 - ECD_00782 0.59 +0.5 835,935 - ECD_00782 0.59 -0.3 836,590 - -0.2 836,602 + -0.4 836,696 + ECD_00783 0.12 -1.1 836,697 - ECD_00783 0.13 -0.2 836,697 - ECD_00783 0.13 -1.6 836,697 - ECD_00783 0.13 +0.0 836,716 + ECD_00783 0.20 -0.3 836,867 - +1.4 836,918 - +1.1 836,918 - +1.5 836,918 - +0.8 836,942 - ECD_04299 0.63 +1.2 836,957 - ECD_04299 0.74 +1.1 836,969 - ECD_04299 0.84 +0.2 836,969 - ECD_04299 0.84 +0.3 836,990 - +0.5 837,008 - +0.2 837,040 - +1.5 837,040 - +1.1 837,044 - +0.3 837,050 - +1.8 837,052 - +0.7 837,075 - +0.3 837,144 + +0.4 837,144 + +0.4 837,148 + +0.0 837,148 + +1.0 837,148 + +0.0 837,149 - -2.2 837,149 - -1.9 837,149 - -0.1 837,160 + +1.2 837,160 + -0.1 837,161 - -1.7 837,296 - ECD_00784 0.26 -2.5
Or see this region's nucleotide sequence