Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00766 and ECD_00767 are separated by 27 nucleotides ECD_00767 and ECD_00768 are separated by 140 nucleotides
ECD_00766: ECD_00766 - ATP-dependent DNA helicase, at 817,062 to 819,212
_00766
ECD_00767: ECD_00767 - putative family 3 glycosyltransferase, at 819,240 to 820,202
_00767
ECD_00768: ECD_00768 - putative dehydrogenase, at 820,343 to 821,428
_00768
Position (kb) 819
820
821 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 818.347 kb on + strand, within ECD_00766 at 818.347 kb on + strand, within ECD_00766 at 818.348 kb on - strand, within ECD_00766 at 818.613 kb on - strand, within ECD_00766 at 818.669 kb on + strand, within ECD_00766 at 818.677 kb on + strand, within ECD_00766 at 818.719 kb on - strand, within ECD_00766 at 819.161 kb on + strand at 819.161 kb on + strand at 819.162 kb on - strand at 819.162 kb on - strand at 819.163 kb on + strand at 819.324 kb on + strand at 819.325 kb on - strand at 819.332 kb on + strand at 819.333 kb on - strand at 819.501 kb on + strand, within ECD_00767 at 819.644 kb on + strand, within ECD_00767 at 819.644 kb on + strand, within ECD_00767 at 819.705 kb on - strand, within ECD_00767 at 819.785 kb on + strand, within ECD_00767 at 819.858 kb on + strand, within ECD_00767 at 819.910 kb on + strand, within ECD_00767 at 819.910 kb on + strand, within ECD_00767 at 819.911 kb on - strand, within ECD_00767 at 819.920 kb on + strand, within ECD_00767 at 819.999 kb on + strand, within ECD_00767 at 820.164 kb on - strand at 820.322 kb on + strand at 820.322 kb on + strand at 820.327 kb on + strand at 820.490 kb on - strand, within ECD_00768 at 820.508 kb on + strand, within ECD_00768 at 820.508 kb on + strand, within ECD_00768 at 820.508 kb on + strand, within ECD_00768 at 820.512 kb on + strand, within ECD_00768 at 820.512 kb on + strand, within ECD_00768 at 820.512 kb on + strand, within ECD_00768 at 820.513 kb on - strand, within ECD_00768 at 820.930 kb on + strand, within ECD_00768 at 821.044 kb on + strand, within ECD_00768 at 821.150 kb on - strand, within ECD_00768
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_10 remove 818,347 + ECD_00766 0.60 -0.7 818,347 + ECD_00766 0.60 -0.1 818,348 - ECD_00766 0.60 -1.8 818,613 - ECD_00766 0.72 -1.2 818,669 + ECD_00766 0.75 +0.2 818,677 + ECD_00766 0.75 +0.6 818,719 - ECD_00766 0.77 +0.0 819,161 + -0.6 819,161 + -0.1 819,162 - -1.2 819,162 - -1.6 819,163 + -0.7 819,324 + -0.6 819,325 - +0.1 819,332 + -0.4 819,333 - -1.5 819,501 + ECD_00767 0.27 -1.3 819,644 + ECD_00767 0.42 -0.4 819,644 + ECD_00767 0.42 -0.3 819,705 - ECD_00767 0.48 -0.6 819,785 + ECD_00767 0.57 +2.2 819,858 + ECD_00767 0.64 -0.8 819,910 + ECD_00767 0.70 +0.4 819,910 + ECD_00767 0.70 +0.2 819,911 - ECD_00767 0.70 -0.5 819,920 + ECD_00767 0.71 +0.2 819,999 + ECD_00767 0.79 +0.4 820,164 - +1.1 820,322 + -0.1 820,322 + -0.1 820,327 + -0.0 820,490 - ECD_00768 0.14 -1.7 820,508 + ECD_00768 0.15 -0.3 820,508 + ECD_00768 0.15 -1.8 820,508 + ECD_00768 0.15 -1.2 820,512 + ECD_00768 0.16 +0.1 820,512 + ECD_00768 0.16 -0.6 820,512 + ECD_00768 0.16 -1.3 820,513 - ECD_00768 0.16 -3.0 820,930 + ECD_00768 0.54 +0.8 821,044 + ECD_00768 0.65 -0.3 821,150 - ECD_00768 0.74 +0.5
Or see this region's nucleotide sequence