Strain Fitness in Escherichia coli BL21 around ECD_00743

Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_10

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_00742 and ECD_00743 overlap by 4 nucleotidesECD_00743 and ECD_00744 overlap by 14 nucleotidesECD_00744 and ECD_00745 overlap by 8 nucleotides ECD_00742: ECD_00742 - biotin synthase, at 793,337 to 794,377 _00742 ECD_00743: ECD_00743 - 8-amino-7-oxononanoate synthase, at 794,374 to 795,528 _00743 ECD_00744: ECD_00744 - malonyl-ACP O-methyltransferase, SAM-dependent, at 795,515 to 796,270 _00744 ECD_00745: ECD_00745 - dethiobiotin synthetase, at 796,263 to 796,940 _00745 Position (kb) 794 795 796Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 793.720 kb on + strand, within ECD_00742at 793.784 kb on + strand, within ECD_00742at 793.785 kb on - strand, within ECD_00742at 793.920 kb on + strand, within ECD_00742at 794.108 kb on + strand, within ECD_00742at 794.109 kb on - strand, within ECD_00742at 794.167 kb on + strand, within ECD_00742at 794.234 kb on - strand, within ECD_00742at 794.495 kb on - strand, within ECD_00743at 794.511 kb on + strand, within ECD_00743at 794.518 kb on + strand, within ECD_00743at 794.547 kb on + strand, within ECD_00743at 794.548 kb on - strand, within ECD_00743at 794.619 kb on + strand, within ECD_00743at 794.619 kb on + strand, within ECD_00743at 794.688 kb on + strand, within ECD_00743at 794.952 kb on - strand, within ECD_00743at 795.160 kb on - strand, within ECD_00743at 795.163 kb on + strand, within ECD_00743at 795.174 kb on + strand, within ECD_00743at 795.175 kb on - strand, within ECD_00743at 795.200 kb on + strand, within ECD_00743at 795.200 kb on + strand, within ECD_00743at 795.200 kb on + strand, within ECD_00743at 795.201 kb on - strand, within ECD_00743at 795.354 kb on + strand, within ECD_00743at 795.526 kb on + strandat 795.573 kb on - strandat 795.591 kb on + strand, within ECD_00744at 795.651 kb on + strand, within ECD_00744at 795.651 kb on + strand, within ECD_00744at 795.724 kb on - strand, within ECD_00744at 795.779 kb on + strand, within ECD_00744at 795.779 kb on + strand, within ECD_00744at 796.236 kb on - strandat 796.414 kb on + strand, within ECD_00745at 796.439 kb on - strand, within ECD_00745at 796.477 kb on + strand, within ECD_00745

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_10
remove
793,720 + ECD_00742 0.37 -1.0
793,784 + ECD_00742 0.43 +1.4
793,785 - ECD_00742 0.43 -2.9
793,920 + ECD_00742 0.56 +0.3
794,108 + ECD_00742 0.74 -0.0
794,109 - ECD_00742 0.74 -0.3
794,167 + ECD_00742 0.80 +1.5
794,234 - ECD_00742 0.86 -1.5
794,495 - ECD_00743 0.10 +0.4
794,511 + ECD_00743 0.12 +0.3
794,518 + ECD_00743 0.12 -1.1
794,547 + ECD_00743 0.15 +0.7
794,548 - ECD_00743 0.15 +0.5
794,619 + ECD_00743 0.21 +1.0
794,619 + ECD_00743 0.21 +1.7
794,688 + ECD_00743 0.27 +1.2
794,952 - ECD_00743 0.50 -1.7
795,160 - ECD_00743 0.68 -0.5
795,163 + ECD_00743 0.68 -0.5
795,174 + ECD_00743 0.69 +0.7
795,175 - ECD_00743 0.69 +0.3
795,200 + ECD_00743 0.72 +1.0
795,200 + ECD_00743 0.72 +0.9
795,200 + ECD_00743 0.72 +0.9
795,201 - ECD_00743 0.72 -0.3
795,354 + ECD_00743 0.85 +1.1
795,526 + -0.9
795,573 - -2.4
795,591 + ECD_00744 0.10 +0.3
795,651 + ECD_00744 0.18 -0.6
795,651 + ECD_00744 0.18 +0.3
795,724 - ECD_00744 0.28 -0.0
795,779 + ECD_00744 0.35 +0.6
795,779 + ECD_00744 0.35 +2.4
796,236 - -0.9
796,414 + ECD_00745 0.22 -0.3
796,439 - ECD_00745 0.26 -0.7
796,477 + ECD_00745 0.32 -1.6

Or see this region's nucleotide sequence