Strain Fitness in Escherichia coli BL21 around ECD_00690

Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00688 and ECD_00689 are separated by 103 nucleotidesECD_00689 and ECD_00690 are separated by 108 nucleotidesECD_00690 and ECD_00691 are separated by 17 nucleotides ECD_00688: ECD_00688 - succinyl-CoA synthetase, NAD(P)-binding, alpha subunit, at 722,841 to 723,710 _00688 ECD_00689: ECD_00689 - transcriptional repressor for the mannosyl-D-glycerate catabolic operon, at 723,814 to 724,536 _00689 ECD_00690: ECD_00690 - fused 2-O-a-mannosyl-D-glycerate specific PTS enzymes: IIA component/IIB component/IIC component, at 724,645 to 726,621 _00690 ECD_00691: ECD_00691 - alpha-mannosidase, at 726,639 to 729,272 _00691 Position (kb) 724 725 726 727Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 723.708 kb on + strandat 723.718 kb on + strandat 723.728 kb on + strandat 723.794 kb on + strandat 723.794 kb on + strandat 723.794 kb on + strandat 723.795 kb on - strandat 723.795 kb on - strandat 723.883 kb on - strandat 723.883 kb on - strandat 723.883 kb on - strandat 723.955 kb on - strand, within ECD_00689at 724.052 kb on + strand, within ECD_00689at 724.235 kb on - strand, within ECD_00689at 724.433 kb on - strand, within ECD_00689at 724.518 kb on - strandat 724.520 kb on - strandat 725.044 kb on - strand, within ECD_00690at 725.049 kb on + strand, within ECD_00690at 725.106 kb on + strand, within ECD_00690at 725.107 kb on - strand, within ECD_00690at 725.108 kb on + strand, within ECD_00690at 725.109 kb on - strand, within ECD_00690at 725.200 kb on - strand, within ECD_00690at 725.242 kb on + strand, within ECD_00690at 725.242 kb on + strand, within ECD_00690at 725.242 kb on + strand, within ECD_00690at 725.243 kb on - strand, within ECD_00690at 725.500 kb on - strand, within ECD_00690at 725.514 kb on + strand, within ECD_00690at 725.704 kb on + strand, within ECD_00690at 725.762 kb on - strand, within ECD_00690at 726.099 kb on + strand, within ECD_00690at 726.225 kb on + strand, within ECD_00690at 726.226 kb on - strand, within ECD_00690at 726.595 kb on + strandat 726.649 kb on + strandat 726.777 kb on + strandat 726.868 kb on + strandat 727.051 kb on - strand, within ECD_00691at 727.197 kb on + strand, within ECD_00691at 727.198 kb on - strand, within ECD_00691at 727.202 kb on - strand, within ECD_00691at 727.226 kb on + strand, within ECD_00691at 727.349 kb on - strand, within ECD_00691at 727.468 kb on - strand, within ECD_00691

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_10
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723,708 + +1.1
723,718 + +1.2
723,728 + +1.5
723,794 + -1.8
723,794 + -1.3
723,794 + +0.3
723,795 - -0.9
723,795 - +1.2
723,883 - +1.5
723,883 - +0.7
723,883 - +1.6
723,955 - ECD_00689 0.20 +0.4
724,052 + ECD_00689 0.33 -1.6
724,235 - ECD_00689 0.58 +1.3
724,433 - ECD_00689 0.86 +0.8
724,518 - +0.7
724,520 - +1.8
725,044 - ECD_00690 0.20 -2.9
725,049 + ECD_00690 0.20 -2.2
725,106 + ECD_00690 0.23 -2.0
725,107 - ECD_00690 0.23 -3.5
725,108 + ECD_00690 0.23 -0.9
725,109 - ECD_00690 0.23 +0.8
725,200 - ECD_00690 0.28 -1.7
725,242 + ECD_00690 0.30 -0.1
725,242 + ECD_00690 0.30 -0.4
725,242 + ECD_00690 0.30 -1.8
725,243 - ECD_00690 0.30 -0.6
725,500 - ECD_00690 0.43 -2.1
725,514 + ECD_00690 0.44 -1.4
725,704 + ECD_00690 0.54 -1.3
725,762 - ECD_00690 0.56 -1.1
726,099 + ECD_00690 0.74 -0.8
726,225 + ECD_00690 0.80 -1.7
726,226 - ECD_00690 0.80 -1.8
726,595 + -0.2
726,649 + -1.9
726,777 + +0.1
726,868 + -0.2
727,051 - ECD_00691 0.16 -2.0
727,197 + ECD_00691 0.21 -3.5
727,198 - ECD_00691 0.21 -1.9
727,202 - ECD_00691 0.21 -0.8
727,226 + ECD_00691 0.22 -2.9
727,349 - ECD_00691 0.27 -1.0
727,468 - ECD_00691 0.31 +1.2

Or see this region's nucleotide sequence