Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00628 and ECD_00629 are separated by 113 nucleotides ECD_00629 and ECD_00630 are separated by 145 nucleotides
ECD_00628: ECD_00628 - heat shock protein, putative NTPase; PhoH-like protein, at 652,212 to 653,291
_00628
ECD_00629: ECD_00629 - tRNA-i(6)A37 methylthiotransferase, at 653,405 to 654,829
_00629
ECD_00630: ECD_00630 - 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol oxygenase, at 654,975 to 656,150
_00630
Position (kb) 653
654
655 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 652.413 kb on - strand, within ECD_00628 at 652.416 kb on - strand, within ECD_00628 at 652.569 kb on - strand, within ECD_00628 at 652.571 kb on - strand, within ECD_00628 at 652.655 kb on - strand, within ECD_00628 at 652.805 kb on - strand, within ECD_00628 at 652.805 kb on - strand, within ECD_00628 at 652.871 kb on - strand, within ECD_00628 at 653.054 kb on - strand, within ECD_00628 at 653.054 kb on - strand, within ECD_00628 at 653.245 kb on - strand at 653.271 kb on - strand at 653.271 kb on - strand at 653.271 kb on - strand at 653.406 kb on + strand at 653.416 kb on - strand at 653.588 kb on - strand, within ECD_00629 at 653.657 kb on - strand, within ECD_00629 at 653.725 kb on + strand, within ECD_00629 at 653.726 kb on - strand, within ECD_00629 at 653.740 kb on + strand, within ECD_00629 at 653.741 kb on - strand, within ECD_00629 at 653.821 kb on + strand, within ECD_00629 at 653.822 kb on - strand, within ECD_00629 at 653.822 kb on - strand, within ECD_00629 at 654.088 kb on + strand, within ECD_00629 at 654.309 kb on - strand, within ECD_00629 at 654.327 kb on + strand, within ECD_00629 at 654.352 kb on - strand, within ECD_00629 at 654.453 kb on - strand, within ECD_00629 at 654.453 kb on - strand, within ECD_00629 at 654.453 kb on - strand, within ECD_00629 at 654.809 kb on - strand at 654.848 kb on + strand at 654.872 kb on + strand at 654.877 kb on + strand at 654.877 kb on + strand at 654.940 kb on - strand at 654.945 kb on + strand at 654.952 kb on + strand at 654.952 kb on + strand at 654.952 kb on + strand at 654.952 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_10 remove 652,413 - ECD_00628 0.19 +0.1 652,416 - ECD_00628 0.19 +0.0 652,569 - ECD_00628 0.33 -0.9 652,571 - ECD_00628 0.33 +0.7 652,655 - ECD_00628 0.41 +0.1 652,805 - ECD_00628 0.55 +0.2 652,805 - ECD_00628 0.55 +1.1 652,871 - ECD_00628 0.61 +0.5 653,054 - ECD_00628 0.78 +0.0 653,054 - ECD_00628 0.78 -1.9 653,245 - -0.5 653,271 - +0.9 653,271 - -1.1 653,271 - +2.2 653,406 + +0.0 653,416 - +0.6 653,588 - ECD_00629 0.13 +0.2 653,657 - ECD_00629 0.18 +0.8 653,725 + ECD_00629 0.22 -2.3 653,726 - ECD_00629 0.23 -1.4 653,740 + ECD_00629 0.24 -2.3 653,741 - ECD_00629 0.24 -1.3 653,821 + ECD_00629 0.29 -2.0 653,822 - ECD_00629 0.29 +0.8 653,822 - ECD_00629 0.29 -1.2 654,088 + ECD_00629 0.48 -4.0 654,309 - ECD_00629 0.63 -2.4 654,327 + ECD_00629 0.65 -2.3 654,352 - ECD_00629 0.66 -2.3 654,453 - ECD_00629 0.74 -1.3 654,453 - ECD_00629 0.74 -1.2 654,453 - ECD_00629 0.74 -0.2 654,809 - -0.8 654,848 + -0.7 654,872 + -0.6 654,877 + -1.9 654,877 + -0.6 654,940 - +0.2 654,945 + +1.6 654,952 + +1.1 654,952 + +0.9 654,952 + +0.7 654,952 + +1.7
Or see this region's nucleotide sequence