Strain Fitness in Escherichia coli BL21 around ECD_00619

Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00617 and ECD_00619 are separated by 536 nucleotidesECD_00619 and ECD_00620 overlap by 4 nucleotides ECD_00617: ECD_00617 - ribonucleoside hydrolase 1, at 641,042 to 641,977 _00617 ECD_00619: ECD_00619 - IS150 hypothetical protein, at 642,514 to 643,035 _00619 ECD_00620: ECD_00620 - IS150 putative transposase, at 643,032 to 643,883 _00620 Position (kb) 642 643 644Strain fitness (log2 ratio) -2 -1 0 1at 641.518 kb on + strand, within ECD_00617at 641.593 kb on + strand, within ECD_00617at 641.841 kb on - strand, within ECD_00617at 641.878 kb on + strand, within ECD_00617at 641.879 kb on - strand, within ECD_00617at 641.921 kb on + strandat 642.027 kb on + strandat 642.027 kb on + strandat 642.096 kb on + strandat 642.364 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_10
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641,518 + ECD_00617 0.51 -0.5
641,593 + ECD_00617 0.59 -2.3
641,841 - ECD_00617 0.85 -1.5
641,878 + ECD_00617 0.89 -1.8
641,879 - ECD_00617 0.89 -1.0
641,921 + +0.3
642,027 + -0.8
642,027 + -0.9
642,096 + -0.8
642,364 + +0.5

Or see this region's nucleotide sequence