Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00589 and ECD_00590 overlap by 32 nucleotides ECD_00590 and ECD_00591 are separated by 40 nucleotides
ECD_00589: ECD_00589 - sensory histidine kinase in two-component regulatory system with CitB, at 612,602 to 614,260
_00589
ECD_00590: ECD_00590 - response regulator in two-component regulatory system with CitA, at 614,229 to 614,909
_00590
ECD_00591: ECD_00591 - anaerobic C4-dicarboxylate transport, at 614,950 to 616,335
_00591
Position (kb) 614
615 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 613.285 kb on + strand, within ECD_00589 at 613.328 kb on + strand, within ECD_00589 at 613.328 kb on + strand, within ECD_00589 at 613.329 kb on - strand, within ECD_00589 at 613.399 kb on + strand, within ECD_00589 at 613.695 kb on - strand, within ECD_00589 at 613.920 kb on + strand, within ECD_00589 at 614.139 kb on - strand at 614.139 kb on - strand at 614.143 kb on - strand at 614.161 kb on + strand at 614.162 kb on - strand at 614.207 kb on + strand at 614.228 kb on - strand at 614.249 kb on - strand at 614.297 kb on + strand, within ECD_00590 at 614.298 kb on - strand, within ECD_00590 at 614.427 kb on - strand, within ECD_00590 at 614.518 kb on + strand, within ECD_00590 at 614.519 kb on - strand, within ECD_00590 at 614.606 kb on + strand, within ECD_00590 at 614.607 kb on - strand, within ECD_00590 at 614.607 kb on - strand, within ECD_00590 at 614.607 kb on - strand, within ECD_00590 at 614.664 kb on + strand, within ECD_00590 at 614.817 kb on + strand, within ECD_00590 at 614.818 kb on - strand, within ECD_00590 at 614.893 kb on + strand at 614.893 kb on + strand at 614.893 kb on + strand at 614.893 kb on + strand at 614.893 kb on + strand at 614.893 kb on + strand at 614.894 kb on - strand at 614.895 kb on + strand at 614.895 kb on + strand at 614.895 kb on + strand at 614.896 kb on - strand at 614.915 kb on + strand at 614.915 kb on + strand at 614.947 kb on + strand at 614.951 kb on + strand at 614.951 kb on + strand at 614.952 kb on - strand at 615.355 kb on - strand, within ECD_00591 at 615.519 kb on + strand, within ECD_00591 at 615.520 kb on - strand, within ECD_00591 at 615.729 kb on + strand, within ECD_00591
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_10 remove 613,285 + ECD_00589 0.41 +0.5 613,328 + ECD_00589 0.44 -0.5 613,328 + ECD_00589 0.44 +0.6 613,329 - ECD_00589 0.44 -1.7 613,399 + ECD_00589 0.48 +0.5 613,695 - ECD_00589 0.66 -2.3 613,920 + ECD_00589 0.79 +0.2 614,139 - -3.5 614,139 - -1.5 614,143 - -0.0 614,161 + -0.5 614,162 - +0.6 614,207 + -1.3 614,228 - -1.1 614,249 - -1.8 614,297 + ECD_00590 0.10 -0.8 614,298 - ECD_00590 0.10 -0.4 614,427 - ECD_00590 0.29 +0.4 614,518 + ECD_00590 0.42 -0.5 614,519 - ECD_00590 0.43 -0.7 614,606 + ECD_00590 0.55 +0.8 614,607 - ECD_00590 0.56 +2.0 614,607 - ECD_00590 0.56 -0.5 614,607 - ECD_00590 0.56 -0.5 614,664 + ECD_00590 0.64 +2.1 614,817 + ECD_00590 0.86 -0.7 614,818 - ECD_00590 0.86 -0.5 614,893 + -0.1 614,893 + -0.5 614,893 + +0.1 614,893 + +0.9 614,893 + -0.6 614,893 + +0.5 614,894 - +0.4 614,895 + -0.1 614,895 + +0.2 614,895 + +0.3 614,896 - -0.6 614,915 + +0.1 614,915 + +0.1 614,947 + +0.3 614,951 + -1.2 614,951 + -1.4 614,952 - -0.2 615,355 - ECD_00591 0.29 -0.9 615,519 + ECD_00591 0.41 -0.7 615,520 - ECD_00591 0.41 -1.4 615,729 + ECD_00591 0.56 -0.9
Or see this region's nucleotide sequence