Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00567 and ECD_00568 are separated by 108 nucleotides ECD_00568 and ECD_00569 are separated by 0 nucleotides ECD_00569 and ECD_00570 overlap by 28 nucleotides
ECD_00567: ECD_00567 - putative oxidoreductase, at 592,865 to 593,953
_00567
ECD_00568: ECD_00568 - methionine aminotransferase, PLP-dependent, at 594,062 to 595,222
_00568
ECD_00569: ECD_00569 - Spo0J family protein, ParB-like nuclease domain, at 595,223 to 595,852
_00569
ECD_00570: ECD_00570 - PAPS reductase-like domain protein, at 595,825 to 596,886
_00570
Position (kb) 594
595
596 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 593.245 kb on + strand, within ECD_00567 at 593.248 kb on + strand, within ECD_00567 at 593.249 kb on - strand, within ECD_00567 at 593.249 kb on - strand, within ECD_00567 at 593.325 kb on - strand, within ECD_00567 at 593.480 kb on - strand, within ECD_00567 at 593.503 kb on + strand, within ECD_00567 at 593.504 kb on - strand, within ECD_00567 at 593.529 kb on + strand, within ECD_00567 at 593.530 kb on - strand, within ECD_00567 at 593.727 kb on - strand, within ECD_00567 at 593.762 kb on - strand, within ECD_00567 at 593.968 kb on - strand at 594.011 kb on - strand at 594.021 kb on + strand at 594.024 kb on - strand at 594.204 kb on + strand, within ECD_00568 at 594.205 kb on - strand, within ECD_00568 at 594.249 kb on - strand, within ECD_00568 at 594.311 kb on + strand, within ECD_00568 at 594.374 kb on + strand, within ECD_00568 at 594.374 kb on + strand, within ECD_00568 at 594.444 kb on - strand, within ECD_00568 at 594.484 kb on + strand, within ECD_00568 at 594.592 kb on + strand, within ECD_00568 at 594.592 kb on + strand, within ECD_00568 at 594.593 kb on - strand, within ECD_00568 at 594.593 kb on - strand, within ECD_00568 at 594.774 kb on - strand, within ECD_00568 at 594.774 kb on - strand, within ECD_00568 at 594.778 kb on + strand, within ECD_00568 at 594.778 kb on + strand, within ECD_00568 at 594.778 kb on + strand, within ECD_00568 at 594.779 kb on - strand, within ECD_00568 at 594.779 kb on - strand, within ECD_00568 at 594.843 kb on + strand, within ECD_00568 at 594.843 kb on + strand, within ECD_00568 at 594.868 kb on - strand, within ECD_00568 at 594.903 kb on + strand, within ECD_00568 at 594.903 kb on + strand, within ECD_00568 at 594.903 kb on + strand, within ECD_00568 at 594.903 kb on + strand, within ECD_00568 at 594.904 kb on - strand, within ECD_00568 at 594.904 kb on - strand, within ECD_00568 at 594.944 kb on + strand, within ECD_00568 at 595.015 kb on + strand, within ECD_00568 at 595.015 kb on + strand, within ECD_00568 at 595.047 kb on + strand, within ECD_00568 at 595.221 kb on - strand at 595.282 kb on + strand at 595.451 kb on - strand, within ECD_00569 at 595.491 kb on - strand, within ECD_00569 at 595.567 kb on + strand, within ECD_00569 at 595.736 kb on + strand, within ECD_00569 at 595.736 kb on + strand, within ECD_00569 at 595.840 kb on + strand at 595.841 kb on - strand at 595.841 kb on - strand at 595.882 kb on - strand at 595.883 kb on + strand at 595.952 kb on - strand, within ECD_00570 at 595.963 kb on + strand, within ECD_00570 at 596.055 kb on - strand, within ECD_00570 at 596.123 kb on + strand, within ECD_00570 at 596.137 kb on + strand, within ECD_00570
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_10 remove 593,245 + ECD_00567 0.35 -0.9 593,248 + ECD_00567 0.35 -1.7 593,249 - ECD_00567 0.35 +0.3 593,249 - ECD_00567 0.35 +0.1 593,325 - ECD_00567 0.42 +0.3 593,480 - ECD_00567 0.56 +0.1 593,503 + ECD_00567 0.59 -0.5 593,504 - ECD_00567 0.59 +0.1 593,529 + ECD_00567 0.61 -2.3 593,530 - ECD_00567 0.61 -0.6 593,727 - ECD_00567 0.79 -0.1 593,762 - ECD_00567 0.82 +0.4 593,968 - -0.5 594,011 - -1.4 594,021 + -1.2 594,024 - +0.0 594,204 + ECD_00568 0.12 +0.1 594,205 - ECD_00568 0.12 -0.7 594,249 - ECD_00568 0.16 +0.0 594,311 + ECD_00568 0.21 +0.2 594,374 + ECD_00568 0.27 +0.4 594,374 + ECD_00568 0.27 -1.1 594,444 - ECD_00568 0.33 -1.5 594,484 + ECD_00568 0.36 +0.9 594,592 + ECD_00568 0.46 -0.2 594,592 + ECD_00568 0.46 +0.2 594,593 - ECD_00568 0.46 +1.2 594,593 - ECD_00568 0.46 -0.5 594,774 - ECD_00568 0.61 -1.1 594,774 - ECD_00568 0.61 -1.4 594,778 + ECD_00568 0.62 -0.1 594,778 + ECD_00568 0.62 -1.4 594,778 + ECD_00568 0.62 -0.2 594,779 - ECD_00568 0.62 +0.4 594,779 - ECD_00568 0.62 -1.6 594,843 + ECD_00568 0.67 -0.5 594,843 + ECD_00568 0.67 -1.3 594,868 - ECD_00568 0.69 -0.8 594,903 + ECD_00568 0.72 -0.9 594,903 + ECD_00568 0.72 -0.3 594,903 + ECD_00568 0.72 -1.7 594,903 + ECD_00568 0.72 -0.1 594,904 - ECD_00568 0.73 -0.3 594,904 - ECD_00568 0.73 +0.2 594,944 + ECD_00568 0.76 -0.8 595,015 + ECD_00568 0.82 -1.0 595,015 + ECD_00568 0.82 -0.6 595,047 + ECD_00568 0.85 -0.5 595,221 - +0.5 595,282 + -2.7 595,451 - ECD_00569 0.36 -0.4 595,491 - ECD_00569 0.43 +0.5 595,567 + ECD_00569 0.55 +1.6 595,736 + ECD_00569 0.81 -0.8 595,736 + ECD_00569 0.81 -3.7 595,840 + -0.6 595,841 - +0.4 595,841 - -0.3 595,882 - -0.1 595,883 + -1.1 595,952 - ECD_00570 0.12 +0.1 595,963 + ECD_00570 0.13 -0.6 596,055 - ECD_00570 0.22 -0.8 596,123 + ECD_00570 0.28 -1.1 596,137 + ECD_00570 0.29 -1.0
Or see this region's nucleotide sequence