Strain Fitness in Escherichia coli BL21 around ECD_00536

Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00535 and ECD_00536 are separated by 11 nucleotidesECD_00536 and ECD_00537 are separated by 101 nucleotides ECD_00535: ECD_00535 - copper/silver efflux system, membrane fusion protein, at 556,161 to 557,384 _00535 ECD_00536: ECD_00536 - copper/silver efflux system, membrane component, at 557,396 to 560,539 _00536 ECD_00537: ECD_00537 - phenylalanine transporter, at 560,641 to 562,017 _00537 Position (kb) 557 558 559 560 561Strain fitness (log2 ratio) -3 -2 -1 0 1at 556.507 kb on - strand, within ECD_00535at 556.567 kb on - strand, within ECD_00535at 556.880 kb on + strand, within ECD_00535at 557.370 kb on - strandat 557.669 kb on + strandat 557.669 kb on + strandat 557.675 kb on + strandat 557.675 kb on + strandat 557.675 kb on + strandat 557.676 kb on - strandat 557.753 kb on - strand, within ECD_00536at 557.813 kb on + strand, within ECD_00536at 557.814 kb on - strand, within ECD_00536at 557.814 kb on - strand, within ECD_00536at 557.842 kb on + strand, within ECD_00536at 557.862 kb on + strand, within ECD_00536at 557.871 kb on + strand, within ECD_00536at 557.892 kb on - strand, within ECD_00536at 557.892 kb on - strand, within ECD_00536at 557.892 kb on - strand, within ECD_00536at 557.991 kb on - strand, within ECD_00536at 558.228 kb on + strand, within ECD_00536at 558.362 kb on - strand, within ECD_00536at 558.368 kb on + strand, within ECD_00536at 558.497 kb on - strand, within ECD_00536at 558.520 kb on + strand, within ECD_00536at 558.529 kb on + strand, within ECD_00536at 558.562 kb on + strand, within ECD_00536at 558.640 kb on + strand, within ECD_00536at 559.061 kb on - strand, within ECD_00536at 559.109 kb on + strand, within ECD_00536at 559.111 kb on + strand, within ECD_00536at 559.111 kb on + strand, within ECD_00536at 559.111 kb on + strand, within ECD_00536at 559.112 kb on - strand, within ECD_00536at 559.179 kb on + strand, within ECD_00536at 559.180 kb on - strand, within ECD_00536at 559.267 kb on - strand, within ECD_00536at 559.524 kb on + strand, within ECD_00536at 559.564 kb on + strand, within ECD_00536at 559.868 kb on + strand, within ECD_00536at 560.005 kb on + strand, within ECD_00536at 560.006 kb on - strand, within ECD_00536at 560.057 kb on + strand, within ECD_00536at 560.057 kb on + strand, within ECD_00536at 560.057 kb on + strand, within ECD_00536at 560.058 kb on - strand, within ECD_00536at 560.095 kb on + strand, within ECD_00536at 560.234 kb on + strandat 560.234 kb on + strandat 560.234 kb on + strandat 560.235 kb on - strandat 560.235 kb on - strandat 560.238 kb on + strandat 560.250 kb on + strandat 560.313 kb on + strandat 560.313 kb on + strandat 560.313 kb on + strandat 560.315 kb on + strandat 560.315 kb on + strandat 560.316 kb on - strandat 560.482 kb on + strandat 560.500 kb on + strandat 560.708 kb on + strandat 560.708 kb on + strandat 560.709 kb on - strandat 560.712 kb on + strandat 560.712 kb on + strandat 560.755 kb on - strandat 561.013 kb on + strand, within ECD_00537at 561.013 kb on + strand, within ECD_00537at 561.014 kb on - strand, within ECD_00537at 561.107 kb on + strand, within ECD_00537at 561.108 kb on - strand, within ECD_00537at 561.108 kb on - strand, within ECD_00537at 561.109 kb on + strand, within ECD_00537at 561.163 kb on - strand, within ECD_00537at 561.294 kb on + strand, within ECD_00537at 561.294 kb on + strand, within ECD_00537

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_10
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556,507 - ECD_00535 0.28 -1.4
556,567 - ECD_00535 0.33 -0.4
556,880 + ECD_00535 0.59 +1.0
557,370 - -0.6
557,669 + -0.8
557,669 + +0.4
557,675 + +0.5
557,675 + -0.3
557,675 + -0.0
557,676 - -1.7
557,753 - ECD_00536 0.11 +0.0
557,813 + ECD_00536 0.13 -0.4
557,814 - ECD_00536 0.13 -0.1
557,814 - ECD_00536 0.13 -2.0
557,842 + ECD_00536 0.14 -0.1
557,862 + ECD_00536 0.15 +0.6
557,871 + ECD_00536 0.15 -0.4
557,892 - ECD_00536 0.16 -0.4
557,892 - ECD_00536 0.16 -0.6
557,892 - ECD_00536 0.16 -2.3
557,991 - ECD_00536 0.19 -0.3
558,228 + ECD_00536 0.26 +0.9
558,362 - ECD_00536 0.31 +1.3
558,368 + ECD_00536 0.31 -1.2
558,497 - ECD_00536 0.35 -2.1
558,520 + ECD_00536 0.36 -2.3
558,529 + ECD_00536 0.36 +0.3
558,562 + ECD_00536 0.37 +0.3
558,640 + ECD_00536 0.40 +0.7
559,061 - ECD_00536 0.53 -0.2
559,109 + ECD_00536 0.54 -0.5
559,111 + ECD_00536 0.55 +0.0
559,111 + ECD_00536 0.55 -0.5
559,111 + ECD_00536 0.55 +0.6
559,112 - ECD_00536 0.55 -0.2
559,179 + ECD_00536 0.57 +0.1
559,180 - ECD_00536 0.57 -1.5
559,267 - ECD_00536 0.60 -0.9
559,524 + ECD_00536 0.68 -0.4
559,564 + ECD_00536 0.69 -0.1
559,868 + ECD_00536 0.79 -0.0
560,005 + ECD_00536 0.83 +1.2
560,006 - ECD_00536 0.83 -1.3
560,057 + ECD_00536 0.85 +1.6
560,057 + ECD_00536 0.85 +0.6
560,057 + ECD_00536 0.85 +0.7
560,058 - ECD_00536 0.85 -2.8
560,095 + ECD_00536 0.86 +0.3
560,234 + -0.3
560,234 + -1.4
560,234 + -1.0
560,235 - -2.5
560,235 - -2.4
560,238 + -0.7
560,250 + -0.1
560,313 + +0.1
560,313 + +0.1
560,313 + -0.6
560,315 + +0.3
560,315 + +0.0
560,316 - -1.0
560,482 + -0.1
560,500 + +0.3
560,708 + -0.5
560,708 + -0.6
560,709 - -1.3
560,712 + -0.1
560,712 + +0.2
560,755 - -2.2
561,013 + ECD_00537 0.27 -0.2
561,013 + ECD_00537 0.27 -0.2
561,014 - ECD_00537 0.27 -1.4
561,107 + ECD_00537 0.34 +0.6
561,108 - ECD_00537 0.34 -1.4
561,108 - ECD_00537 0.34 -0.7
561,109 + ECD_00537 0.34 +0.4
561,163 - ECD_00537 0.38 -2.7
561,294 + ECD_00537 0.47 -0.1
561,294 + ECD_00537 0.47 -0.3

Or see this region's nucleotide sequence