Strain Fitness in Escherichia coli BL21 around ECD_00504

Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00502 and ECD_00504 are separated by 717 nucleotidesECD_00504 and ECD_00505 overlap by 82 nucleotides ECD_00502: ECD_00502 - DLP12 prophage; putative antitermination protein, at 542,551 to 542,934 _00502 ECD_00504: ECD_00504 - IS1 protein InsB, at 543,652 to 544,155 _00504 ECD_00505: ECD_00505 - IS1 protein InsA, at 544,074 to 544,349 _00505 Position (kb) 543 544 545Strain fitness (log2 ratio) -3 -2 -1 0 1at 542.774 kb on - strand, within ECD_00502at 543.126 kb on - strandat 543.206 kb on - strandat 543.258 kb on + strandat 543.275 kb on + strandat 543.283 kb on + strandat 543.449 kb on + strandat 543.469 kb on - strandat 543.503 kb on - strandat 543.546 kb on - strandat 543.608 kb on + strandat 543.615 kb on - strandat 544.374 kb on + strandat 544.432 kb on + strandat 544.460 kb on + strandat 544.509 kb on + strandat 544.622 kb on - strandat 544.622 kb on - strandat 544.622 kb on - strandat 544.622 kb on - strandat 544.811 kb on + strandat 544.811 kb on + strandat 544.812 kb on - strandat 544.812 kb on - strandat 544.816 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_10
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542,774 - ECD_00502 0.58 -2.7
543,126 - -0.7
543,206 - -0.2
543,258 + +0.5
543,275 + -0.5
543,283 + -0.5
543,449 + -0.5
543,469 - -1.2
543,503 - -1.6
543,546 - -1.1
543,608 + -0.3
543,615 - -2.1
544,374 + -0.4
544,432 + -0.8
544,460 + -3.1
544,509 + -1.5
544,622 - +0.4
544,622 - +0.8
544,622 - +1.5
544,622 - +0.3
544,811 + -1.2
544,811 + -1.2
544,812 - +1.2
544,812 - -0.8
544,816 - -0.6

Or see this region's nucleotide sequence