Strain Fitness in Escherichia coli BL21 around ECD_00495

Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00494 and ECD_00495 are separated by 464 nucleotidesECD_00495 and ECD_00496 are separated by 9 nucleotides ECD_00494: ECD_00494 - DLP12 prophage; putative recombinase, at 537,497 to 539,023 _00494 ECD_00495: ECD_00495 - inactive polymorphonuclear leukocyte migration suppressor; DLP12 prophage; UPF0098 family secreted protein, at 539,488 to 540,039 _00495 ECD_00496: ECD_00496 - DLP12 prophage; putative DNA-binding transcriptional regulator, at 540,049 to 540,846 _00496 Position (kb) 539 540 541Strain fitness (log2 ratio) -2 -1 0 1at 539.637 kb on + strand, within ECD_00495at 539.637 kb on + strand, within ECD_00495at 539.699 kb on + strand, within ECD_00495at 539.773 kb on + strand, within ECD_00495at 539.889 kb on + strand, within ECD_00495at 540.069 kb on + strandat 540.613 kb on + strand, within ECD_00496at 540.632 kb on + strand, within ECD_00496at 540.908 kb on + strandat 540.962 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_10
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539,637 + ECD_00495 0.27 -1.6
539,637 + ECD_00495 0.27 -2.1
539,699 + ECD_00495 0.38 -1.0
539,773 + ECD_00495 0.52 -2.0
539,889 + ECD_00495 0.73 -1.0
540,069 + -2.0
540,613 + ECD_00496 0.71 -0.1
540,632 + ECD_00496 0.73 -0.2
540,908 + -0.1
540,962 + -2.4

Or see this region's nucleotide sequence