Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00431 and ECD_00432 are separated by 36 nucleotides ECD_00432 and ECD_00433 are separated by 203 nucleotides
ECD_00431: ECD_00431 - bifunctional UDP-sugar hydrolase/5'-nucleotidase, at 473,960 to 475,612
_00431
ECD_00432: ECD_00432 - Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase, at 475,649 to 476,128
_00432
ECD_00433: ECD_00433 - TraB family protein, at 476,332 to 477,126
_00433
Position (kb) 475
476
477 Strain fitness (log2 ratio) -2
-1
0
1 at 474.840 kb on - strand, within ECD_00431 at 475.005 kb on + strand, within ECD_00431 at 475.217 kb on + strand, within ECD_00431 at 475.263 kb on - strand, within ECD_00431 at 475.447 kb on - strand at 475.519 kb on + strand at 475.545 kb on - strand at 475.545 kb on - strand at 475.650 kb on + strand at 475.749 kb on + strand, within ECD_00432 at 475.753 kb on + strand, within ECD_00432 at 476.168 kb on + strand at 476.169 kb on - strand at 476.213 kb on + strand at 476.275 kb on - strand at 476.275 kb on - strand at 476.375 kb on - strand at 476.375 kb on - strand at 476.375 kb on - strand at 476.375 kb on - strand at 476.396 kb on + strand at 476.396 kb on + strand at 476.397 kb on - strand at 476.465 kb on + strand, within ECD_00433 at 476.485 kb on - strand, within ECD_00433 at 476.497 kb on + strand, within ECD_00433 at 476.497 kb on + strand, within ECD_00433 at 476.498 kb on - strand, within ECD_00433 at 476.498 kb on - strand, within ECD_00433 at 476.498 kb on - strand, within ECD_00433 at 476.498 kb on - strand, within ECD_00433 at 476.499 kb on + strand, within ECD_00433 at 476.499 kb on + strand, within ECD_00433 at 476.500 kb on - strand, within ECD_00433 at 476.500 kb on - strand, within ECD_00433 at 476.506 kb on - strand, within ECD_00433 at 476.670 kb on + strand, within ECD_00433 at 476.671 kb on - strand, within ECD_00433 at 476.893 kb on - strand, within ECD_00433 at 477.003 kb on + strand, within ECD_00433 at 477.051 kb on + strand at 477.127 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_10 remove 474,840 - ECD_00431 0.53 -1.3 475,005 + ECD_00431 0.63 -0.8 475,217 + ECD_00431 0.76 +0.7 475,263 - ECD_00431 0.79 +1.2 475,447 - -2.1 475,519 + +0.3 475,545 - -0.8 475,545 - -2.5 475,650 + -1.2 475,749 + ECD_00432 0.21 -0.6 475,753 + ECD_00432 0.22 -0.4 476,168 + -0.4 476,169 - -0.5 476,213 + -0.4 476,275 - -0.2 476,275 - -1.0 476,375 - +0.8 476,375 - +0.0 476,375 - +0.3 476,375 - -0.2 476,396 + -0.7 476,396 + +0.3 476,397 - +0.8 476,465 + ECD_00433 0.17 -1.1 476,485 - ECD_00433 0.19 -0.1 476,497 + ECD_00433 0.21 -2.4 476,497 + ECD_00433 0.21 -1.1 476,498 - ECD_00433 0.21 -0.3 476,498 - ECD_00433 0.21 -0.0 476,498 - ECD_00433 0.21 +0.3 476,498 - ECD_00433 0.21 -0.2 476,499 + ECD_00433 0.21 +0.2 476,499 + ECD_00433 0.21 +0.2 476,500 - ECD_00433 0.21 +0.2 476,500 - ECD_00433 0.21 -0.6 476,506 - ECD_00433 0.22 -0.9 476,670 + ECD_00433 0.43 -0.2 476,671 - ECD_00433 0.43 -0.9 476,893 - ECD_00433 0.71 -0.7 477,003 + ECD_00433 0.84 -0.2 477,051 + -1.4 477,127 - -0.8
Or see this region's nucleotide sequence