Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00384 and ECD_00385 are separated by 43 nucleotides ECD_00385 and ECD_00386 are separated by 304 nucleotides ECD_00386 and ECD_00387 are separated by 343 nucleotides
ECD_00384: ECD_00384 - muropeptide transporter, at 419,754 to 421,229
_00384
ECD_00385: ECD_00385 - putative lipoprotein, at 421,273 to 421,851
_00385
ECD_00386: ECD_00386 - stationary-phase morphogene, transcriptional repressor for mreB; also regulator for dacA, dacC, and ampC, at 422,156 to 422,473
_00386
ECD_00387: ECD_00387 - peptidyl-prolyl cis/trans isomerase (trigger factor), at 422,817 to 424,115
_00387
Position (kb) 422
423 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 421.238 kb on - strand at 421.324 kb on - strand at 421.324 kb on - strand at 421.324 kb on - strand at 421.407 kb on - strand, within ECD_00385 at 421.491 kb on - strand, within ECD_00385 at 421.521 kb on - strand, within ECD_00385 at 421.521 kb on - strand, within ECD_00385 at 421.575 kb on - strand, within ECD_00385 at 421.575 kb on - strand, within ECD_00385 at 421.717 kb on + strand, within ECD_00385 at 421.758 kb on + strand, within ECD_00385 at 421.813 kb on - strand at 421.813 kb on - strand at 421.813 kb on - strand at 421.873 kb on + strand at 421.874 kb on - strand at 421.874 kb on - strand at 421.942 kb on + strand at 422.032 kb on + strand at 422.066 kb on + strand at 422.066 kb on + strand at 422.067 kb on - strand at 422.076 kb on + strand at 422.175 kb on + strand at 422.220 kb on + strand, within ECD_00386 at 422.365 kb on + strand, within ECD_00386 at 422.366 kb on - strand, within ECD_00386 at 422.390 kb on - strand, within ECD_00386 at 422.390 kb on - strand, within ECD_00386 at 422.390 kb on - strand, within ECD_00386 at 422.393 kb on + strand, within ECD_00386 at 422.393 kb on + strand, within ECD_00386 at 422.394 kb on - strand, within ECD_00386 at 422.394 kb on - strand, within ECD_00386 at 422.394 kb on - strand, within ECD_00386 at 422.394 kb on - strand, within ECD_00386 at 422.398 kb on + strand, within ECD_00386 at 422.399 kb on - strand, within ECD_00386 at 422.399 kb on - strand, within ECD_00386 at 422.666 kb on + strand at 422.730 kb on - strand at 422.731 kb on + strand at 422.810 kb on + strand at 422.868 kb on - strand at 422.900 kb on + strand at 422.932 kb on + strand at 422.936 kb on + strand at 422.936 kb on + strand at 423.090 kb on + strand, within ECD_00387 at 423.105 kb on + strand, within ECD_00387 at 423.129 kb on + strand, within ECD_00387 at 423.129 kb on + strand, within ECD_00387 at 423.251 kb on + strand, within ECD_00387 at 423.395 kb on + strand, within ECD_00387
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_10 remove 421,238 - +0.5 421,324 - +0.2 421,324 - -0.4 421,324 - +0.1 421,407 - ECD_00385 0.23 -0.2 421,491 - ECD_00385 0.38 -0.2 421,521 - ECD_00385 0.43 +0.4 421,521 - ECD_00385 0.43 -0.8 421,575 - ECD_00385 0.52 +0.1 421,575 - ECD_00385 0.52 +0.4 421,717 + ECD_00385 0.77 -0.4 421,758 + ECD_00385 0.84 -2.9 421,813 - -2.0 421,813 - -1.9 421,813 - -3.3 421,873 + -1.2 421,874 - -1.0 421,874 - -1.1 421,942 + +0.2 422,032 + +0.7 422,066 + +0.8 422,066 + -0.2 422,067 - +0.4 422,076 + +0.8 422,175 + -0.1 422,220 + ECD_00386 0.20 +0.9 422,365 + ECD_00386 0.66 +0.6 422,366 - ECD_00386 0.66 -2.0 422,390 - ECD_00386 0.74 -0.9 422,390 - ECD_00386 0.74 +0.0 422,390 - ECD_00386 0.74 -0.5 422,393 + ECD_00386 0.75 +0.1 422,393 + ECD_00386 0.75 +0.5 422,394 - ECD_00386 0.75 +0.1 422,394 - ECD_00386 0.75 -1.8 422,394 - ECD_00386 0.75 -2.4 422,394 - ECD_00386 0.75 -0.8 422,398 + ECD_00386 0.76 +0.6 422,399 - ECD_00386 0.76 +1.5 422,399 - ECD_00386 0.76 -1.1 422,666 + -0.3 422,730 - -1.8 422,731 + +0.5 422,810 + +0.3 422,868 - -1.8 422,900 + +0.1 422,932 + +0.4 422,936 + +0.0 422,936 + +0.5 423,090 + ECD_00387 0.21 +0.7 423,105 + ECD_00387 0.22 +0.1 423,129 + ECD_00387 0.24 +0.1 423,129 + ECD_00387 0.24 +0.3 423,251 + ECD_00387 0.33 -0.2 423,395 + ECD_00387 0.44 +0.2
Or see this region's nucleotide sequence