Strain Fitness in Escherichia coli BL21 around ECD_00349

Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00348 and ECD_00349 are separated by 406 nucleotidesECD_00349 and ECD_00350 are separated by 75 nucleotides ECD_00348: ECD_00348 - sensory histidine kinase in two-component regulatory system with PhoB, at 383,291 to 384,586 _00348 ECD_00349: ECD_00349 - branched-chain amino acid transport system 2 carrier protein; LIV-II transport system for Ile, Leu, and Val, at 384,993 to 386,312 _00349 ECD_00350: ECD_00350 - proline-specific permease, at 386,388 to 387,761 _00350 Position (kb) 384 385 386 387Strain fitness (log2 ratio) -3 -2 -1 0 1at 384.193 kb on + strand, within ECD_00348at 384.205 kb on - strand, within ECD_00348at 384.269 kb on + strand, within ECD_00348at 384.269 kb on + strand, within ECD_00348at 384.270 kb on - strand, within ECD_00348at 384.304 kb on + strand, within ECD_00348at 384.305 kb on - strand, within ECD_00348at 384.312 kb on + strand, within ECD_00348at 384.518 kb on - strandat 384.564 kb on + strandat 384.834 kb on + strandat 384.894 kb on - strandat 384.917 kb on + strandat 384.962 kb on + strandat 384.962 kb on + strandat 384.985 kb on + strandat 384.986 kb on - strandat 384.992 kb on + strandat 384.993 kb on - strandat 385.006 kb on + strandat 385.067 kb on + strandat 385.067 kb on + strandat 385.074 kb on - strandat 385.261 kb on - strand, within ECD_00349at 385.366 kb on - strand, within ECD_00349at 385.366 kb on - strand, within ECD_00349at 385.366 kb on - strand, within ECD_00349at 385.378 kb on - strand, within ECD_00349at 385.511 kb on + strand, within ECD_00349at 385.511 kb on + strand, within ECD_00349at 385.512 kb on - strand, within ECD_00349at 385.586 kb on + strand, within ECD_00349at 385.616 kb on + strand, within ECD_00349at 385.671 kb on + strand, within ECD_00349at 385.671 kb on + strand, within ECD_00349at 385.672 kb on - strand, within ECD_00349at 385.673 kb on + strand, within ECD_00349at 385.674 kb on - strand, within ECD_00349at 385.917 kb on + strand, within ECD_00349at 385.917 kb on + strand, within ECD_00349at 385.937 kb on + strand, within ECD_00349at 386.034 kb on + strand, within ECD_00349at 386.046 kb on - strand, within ECD_00349at 386.060 kb on - strand, within ECD_00349at 386.087 kb on + strand, within ECD_00349at 386.087 kb on + strand, within ECD_00349at 386.088 kb on - strand, within ECD_00349at 386.175 kb on - strand, within ECD_00349at 386.179 kb on + strand, within ECD_00349at 386.264 kb on + strandat 386.363 kb on + strandat 386.396 kb on + strandat 386.396 kb on + strandat 386.407 kb on + strandat 386.434 kb on + strandat 386.434 kb on + strandat 386.435 kb on - strandat 386.532 kb on - strand, within ECD_00350at 386.535 kb on - strand, within ECD_00350at 386.553 kb on + strand, within ECD_00350at 386.554 kb on - strand, within ECD_00350at 386.555 kb on + strand, within ECD_00350at 386.556 kb on - strand, within ECD_00350at 386.556 kb on - strand, within ECD_00350at 386.561 kb on + strand, within ECD_00350at 386.588 kb on - strand, within ECD_00350at 386.652 kb on + strand, within ECD_00350at 386.670 kb on + strand, within ECD_00350at 386.720 kb on + strand, within ECD_00350at 386.724 kb on + strand, within ECD_00350at 386.724 kb on + strand, within ECD_00350at 386.724 kb on + strand, within ECD_00350at 386.724 kb on + strand, within ECD_00350at 386.724 kb on + strand, within ECD_00350at 386.724 kb on + strand, within ECD_00350at 386.724 kb on + strand, within ECD_00350at 386.724 kb on + strand, within ECD_00350at 386.724 kb on + strand, within ECD_00350at 386.724 kb on + strand, within ECD_00350at 386.725 kb on - strand, within ECD_00350at 386.725 kb on - strand, within ECD_00350at 386.725 kb on - strand, within ECD_00350at 386.725 kb on - strand, within ECD_00350at 386.725 kb on - strand, within ECD_00350at 386.725 kb on - strand, within ECD_00350at 386.727 kb on - strand, within ECD_00350at 386.819 kb on - strand, within ECD_00350at 386.942 kb on + strand, within ECD_00350at 386.992 kb on + strand, within ECD_00350at 387.095 kb on + strand, within ECD_00350at 387.113 kb on + strand, within ECD_00350at 387.126 kb on + strand, within ECD_00350at 387.149 kb on + strand, within ECD_00350at 387.149 kb on + strand, within ECD_00350at 387.150 kb on - strand, within ECD_00350at 387.155 kb on + strand, within ECD_00350at 387.155 kb on + strand, within ECD_00350at 387.160 kb on - strand, within ECD_00350at 387.215 kb on + strand, within ECD_00350at 387.224 kb on + strand, within ECD_00350at 387.281 kb on + strand, within ECD_00350at 387.281 kb on + strand, within ECD_00350at 387.292 kb on + strand, within ECD_00350at 387.292 kb on + strand, within ECD_00350at 387.292 kb on + strand, within ECD_00350at 387.293 kb on - strand, within ECD_00350at 387.302 kb on - strand, within ECD_00350

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_10
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384,193 + ECD_00348 0.70 -0.6
384,205 - ECD_00348 0.71 -1.2
384,269 + ECD_00348 0.75 +0.1
384,269 + ECD_00348 0.75 +0.9
384,270 - ECD_00348 0.76 -0.6
384,304 + ECD_00348 0.78 +0.0
384,305 - ECD_00348 0.78 +0.4
384,312 + ECD_00348 0.79 -0.3
384,518 - +0.0
384,564 + -0.6
384,834 + +0.5
384,894 - +0.6
384,917 + -0.0
384,962 + +0.4
384,962 + +1.1
384,985 + -0.3
384,986 - -0.0
384,992 + +0.1
384,993 - -0.2
385,006 + -0.5
385,067 + +0.1
385,067 + +0.5
385,074 - -0.8
385,261 - ECD_00349 0.20 +0.1
385,366 - ECD_00349 0.28 -1.8
385,366 - ECD_00349 0.28 -0.6
385,366 - ECD_00349 0.28 -2.1
385,378 - ECD_00349 0.29 -1.1
385,511 + ECD_00349 0.39 +0.6
385,511 + ECD_00349 0.39 +0.7
385,512 - ECD_00349 0.39 -1.4
385,586 + ECD_00349 0.45 +0.1
385,616 + ECD_00349 0.47 +0.6
385,671 + ECD_00349 0.51 +0.2
385,671 + ECD_00349 0.51 +1.1
385,672 - ECD_00349 0.51 -2.1
385,673 + ECD_00349 0.52 +0.2
385,674 - ECD_00349 0.52 -1.3
385,917 + ECD_00349 0.70 -0.3
385,917 + ECD_00349 0.70 -0.1
385,937 + ECD_00349 0.72 +0.4
386,034 + ECD_00349 0.79 +1.0
386,046 - ECD_00349 0.80 -0.5
386,060 - ECD_00349 0.81 -2.1
386,087 + ECD_00349 0.83 +0.6
386,087 + ECD_00349 0.83 +0.5
386,088 - ECD_00349 0.83 -1.2
386,175 - ECD_00349 0.90 -2.1
386,179 + ECD_00349 0.90 +0.2
386,264 + +0.6
386,363 + +0.8
386,396 + -0.5
386,396 + +0.3
386,407 + -0.7
386,434 + -0.6
386,434 + -0.0
386,435 - -0.6
386,532 - ECD_00350 0.10 -0.2
386,535 - ECD_00350 0.11 -0.1
386,553 + ECD_00350 0.12 -0.3
386,554 - ECD_00350 0.12 -0.6
386,555 + ECD_00350 0.12 +0.3
386,556 - ECD_00350 0.12 -0.5
386,556 - ECD_00350 0.12 -0.4
386,561 + ECD_00350 0.13 -0.1
386,588 - ECD_00350 0.15 -0.4
386,652 + ECD_00350 0.19 -0.4
386,670 + ECD_00350 0.21 -0.8
386,720 + ECD_00350 0.24 +0.4
386,724 + ECD_00350 0.24 -0.2
386,724 + ECD_00350 0.24 +0.5
386,724 + ECD_00350 0.24 -0.9
386,724 + ECD_00350 0.24 +0.6
386,724 + ECD_00350 0.24 +0.2
386,724 + ECD_00350 0.24 -0.2
386,724 + ECD_00350 0.24 +0.1
386,724 + ECD_00350 0.24 +0.5
386,724 + ECD_00350 0.24 +0.1
386,724 + ECD_00350 0.24 +0.7
386,725 - ECD_00350 0.25 -1.1
386,725 - ECD_00350 0.25 -1.8
386,725 - ECD_00350 0.25 +1.0
386,725 - ECD_00350 0.25 -0.6
386,725 - ECD_00350 0.25 -2.3
386,725 - ECD_00350 0.25 -0.8
386,727 - ECD_00350 0.25 -1.3
386,819 - ECD_00350 0.31 -2.9
386,942 + ECD_00350 0.40 +1.0
386,992 + ECD_00350 0.44 -0.2
387,095 + ECD_00350 0.51 +1.7
387,113 + ECD_00350 0.53 -0.9
387,126 + ECD_00350 0.54 +0.6
387,149 + ECD_00350 0.55 -0.1
387,149 + ECD_00350 0.55 +0.2
387,150 - ECD_00350 0.55 -0.9
387,155 + ECD_00350 0.56 -0.3
387,155 + ECD_00350 0.56 -0.2
387,160 - ECD_00350 0.56 -1.2
387,215 + ECD_00350 0.60 -0.2
387,224 + ECD_00350 0.61 -0.0
387,281 + ECD_00350 0.65 +1.7
387,281 + ECD_00350 0.65 +0.0
387,292 + ECD_00350 0.66 +0.6
387,292 + ECD_00350 0.66 -0.7
387,292 + ECD_00350 0.66 -0.5
387,293 - ECD_00350 0.66 +0.4
387,302 - ECD_00350 0.67 -1.3

Or see this region's nucleotide sequence