Strain Fitness in Escherichia coli BL21 around ECD_00346

Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00345 and ECD_00346 overlap by 4 nucleotidesECD_00346 and ECD_00347 are separated by 189 nucleotidesECD_00347 and ECD_00348 are separated by 57 nucleotides ECD_00345: ECD_00345 - exonuclease, dsDNA, ATP-dependent, at 378,009 to 381,155 _00345 ECD_00346: ECD_00346 - exonuclease, dsDNA, ATP-dependent, at 381,152 to 382,354 _00346 ECD_00347: ECD_00347 - response regulator in two-component regulatory system with PhoR, at 382,544 to 383,233 _00347 ECD_00348: ECD_00348 - sensory histidine kinase in two-component regulatory system with PhoB, at 383,291 to 384,586 _00348 Position (kb) 381 382 383Strain fitness (log2 ratio) -3 -2 -1 0 1at 380.208 kb on + strand, within ECD_00345at 380.762 kb on + strand, within ECD_00345at 380.763 kb on - strand, within ECD_00345at 381.115 kb on - strandat 381.350 kb on + strand, within ECD_00346at 381.351 kb on - strand, within ECD_00346at 381.458 kb on + strand, within ECD_00346at 381.594 kb on + strand, within ECD_00346at 381.594 kb on + strand, within ECD_00346at 381.595 kb on - strand, within ECD_00346at 381.595 kb on - strand, within ECD_00346at 381.595 kb on - strand, within ECD_00346at 381.595 kb on - strand, within ECD_00346at 381.598 kb on + strand, within ECD_00346at 381.598 kb on + strand, within ECD_00346at 381.599 kb on - strand, within ECD_00346at 381.688 kb on + strand, within ECD_00346at 381.706 kb on - strand, within ECD_00346at 381.754 kb on + strand, within ECD_00346at 381.757 kb on - strand, within ECD_00346at 381.757 kb on - strand, within ECD_00346at 381.757 kb on - strand, within ECD_00346at 381.800 kb on + strand, within ECD_00346at 381.800 kb on + strand, within ECD_00346at 381.801 kb on - strand, within ECD_00346at 381.861 kb on + strand, within ECD_00346at 381.877 kb on - strand, within ECD_00346at 381.943 kb on + strand, within ECD_00346at 381.943 kb on + strand, within ECD_00346at 381.944 kb on - strand, within ECD_00346at 381.944 kb on - strand, within ECD_00346at 382.167 kb on + strand, within ECD_00346at 382.167 kb on + strand, within ECD_00346at 382.168 kb on - strand, within ECD_00346at 382.168 kb on - strand, within ECD_00346at 382.226 kb on - strand, within ECD_00346at 382.389 kb on - strandat 382.449 kb on + strandat 382.449 kb on + strandat 382.493 kb on + strandat 382.507 kb on + strandat 382.508 kb on - strandat 382.521 kb on + strandat 382.525 kb on + strandat 382.525 kb on + strandat 382.525 kb on + strandat 382.526 kb on - strandat 382.528 kb on + strandat 382.646 kb on + strand, within ECD_00347at 382.710 kb on + strand, within ECD_00347at 382.847 kb on + strand, within ECD_00347at 382.850 kb on - strand, within ECD_00347at 383.101 kb on + strand, within ECD_00347at 383.102 kb on - strand, within ECD_00347at 383.108 kb on + strand, within ECD_00347at 383.108 kb on + strand, within ECD_00347at 383.109 kb on - strand, within ECD_00347at 383.109 kb on - strand, within ECD_00347at 383.109 kb on - strand, within ECD_00347at 383.122 kb on + strand, within ECD_00347at 383.148 kb on + strand, within ECD_00347at 383.153 kb on - strand, within ECD_00347at 383.153 kb on - strand, within ECD_00347at 383.264 kb on + strandat 383.283 kb on + strandat 383.288 kb on + strandat 383.288 kb on + strandat 383.288 kb on + strandat 383.289 kb on - strandat 383.289 kb on - strandat 383.289 kb on - strandat 383.289 kb on - strandat 383.334 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_10
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380,208 + ECD_00345 0.70 -0.5
380,762 + ECD_00345 0.87 -1.4
380,763 - ECD_00345 0.88 -0.2
381,115 - -0.6
381,350 + ECD_00346 0.16 -2.9
381,351 - ECD_00346 0.17 -0.2
381,458 + ECD_00346 0.25 -0.5
381,594 + ECD_00346 0.37 -1.6
381,594 + ECD_00346 0.37 -0.4
381,595 - ECD_00346 0.37 -0.2
381,595 - ECD_00346 0.37 +1.1
381,595 - ECD_00346 0.37 +0.5
381,595 - ECD_00346 0.37 -0.5
381,598 + ECD_00346 0.37 -1.6
381,598 + ECD_00346 0.37 +0.2
381,599 - ECD_00346 0.37 -1.4
381,688 + ECD_00346 0.45 +1.0
381,706 - ECD_00346 0.46 +0.2
381,754 + ECD_00346 0.50 +0.5
381,757 - ECD_00346 0.50 +0.3
381,757 - ECD_00346 0.50 -0.9
381,757 - ECD_00346 0.50 +1.1
381,800 + ECD_00346 0.54 +0.4
381,800 + ECD_00346 0.54 -1.2
381,801 - ECD_00346 0.54 -0.9
381,861 + ECD_00346 0.59 +0.4
381,877 - ECD_00346 0.60 -1.0
381,943 + ECD_00346 0.66 -0.2
381,943 + ECD_00346 0.66 -0.3
381,944 - ECD_00346 0.66 +1.3
381,944 - ECD_00346 0.66 -0.3
382,167 + ECD_00346 0.84 +0.1
382,167 + ECD_00346 0.84 +0.6
382,168 - ECD_00346 0.84 -0.5
382,168 - ECD_00346 0.84 +0.7
382,226 - ECD_00346 0.89 +0.3
382,389 - -0.8
382,449 + +0.0
382,449 + -0.5
382,493 + +0.6
382,507 + +0.0
382,508 - -0.2
382,521 + +0.5
382,525 + +0.4
382,525 + +0.3
382,525 + -0.1
382,526 - -0.8
382,528 + +0.4
382,646 + ECD_00347 0.15 +0.3
382,710 + ECD_00347 0.24 +0.3
382,847 + ECD_00347 0.44 -0.1
382,850 - ECD_00347 0.44 -0.7
383,101 + ECD_00347 0.81 -0.1
383,102 - ECD_00347 0.81 -0.4
383,108 + ECD_00347 0.82 +0.5
383,108 + ECD_00347 0.82 -0.2
383,109 - ECD_00347 0.82 -0.7
383,109 - ECD_00347 0.82 -0.9
383,109 - ECD_00347 0.82 -0.2
383,122 + ECD_00347 0.84 +0.2
383,148 + ECD_00347 0.88 +0.1
383,153 - ECD_00347 0.88 -0.9
383,153 - ECD_00347 0.88 +0.8
383,264 + +0.4
383,283 + +0.5
383,288 + +0.5
383,288 + +0.2
383,288 + +0.9
383,289 - -1.7
383,289 - +0.0
383,289 - +0.2
383,289 - -0.2
383,334 + -0.3

Or see this region's nucleotide sequence