Strain Fitness in Escherichia coli BL21 around ECD_00332

Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00330 and ECD_00331 are separated by 118 nucleotidesECD_00331 and ECD_00332 are separated by 101 nucleotidesECD_00332 and ECD_00333 are separated by 16 nucleotidesECD_00333 and ECD_00334 are separated by 119 nucleotides ECD_00330: ECD_00330 - bacterial alkaline phosphatase, at 366,372 to 367,787 _00330 ECD_00331: ECD_00331 - PsiF family protein, at 367,906 to 368,226 _00331 ECD_00332: ECD_00332 - diguanylate cyclase, cellulose regualtor, at 368,328 to 369,443 _00332 ECD_00333: ECD_00333 - pyrroline-5-carboxylate reductase, NAD(P)-binding, at 369,460 to 370,269 _00333 ECD_00334: ECD_00334 - UPF0178 family protein, at 370,389 to 370,847 _00334 Position (kb) 368 369 370Strain fitness (log2 ratio) -3 -2 -1 0 1at 367.532 kb on - strand, within ECD_00330at 367.532 kb on - strand, within ECD_00330at 367.611 kb on - strand, within ECD_00330at 367.641 kb on + strand, within ECD_00330at 367.641 kb on + strand, within ECD_00330at 367.755 kb on + strandat 367.756 kb on - strandat 367.849 kb on + strandat 367.906 kb on - strandat 367.926 kb on + strandat 367.926 kb on + strandat 367.926 kb on + strandat 367.927 kb on - strandat 368.001 kb on + strand, within ECD_00331at 368.002 kb on - strand, within ECD_00331at 368.002 kb on - strand, within ECD_00331at 368.002 kb on - strand, within ECD_00331at 368.062 kb on + strand, within ECD_00331at 368.063 kb on - strand, within ECD_00331at 368.146 kb on - strand, within ECD_00331at 368.187 kb on + strand, within ECD_00331at 368.196 kb on + strandat 368.197 kb on - strandat 368.197 kb on - strandat 368.305 kb on + strandat 368.306 kb on - strandat 368.575 kb on + strand, within ECD_00332at 368.613 kb on - strand, within ECD_00332at 368.633 kb on - strand, within ECD_00332at 368.714 kb on + strand, within ECD_00332at 368.714 kb on + strand, within ECD_00332at 368.867 kb on + strand, within ECD_00332at 368.878 kb on - strand, within ECD_00332at 368.982 kb on + strand, within ECD_00332at 368.983 kb on - strand, within ECD_00332at 368.983 kb on - strand, within ECD_00332at 369.005 kb on + strand, within ECD_00332at 369.005 kb on + strand, within ECD_00332at 369.005 kb on + strand, within ECD_00332at 369.006 kb on - strand, within ECD_00332at 369.396 kb on + strandat 369.589 kb on - strand, within ECD_00333at 369.589 kb on - strand, within ECD_00333at 369.589 kb on - strand, within ECD_00333at 369.589 kb on - strand, within ECD_00333at 369.647 kb on - strand, within ECD_00333at 369.729 kb on + strand, within ECD_00333at 369.729 kb on + strand, within ECD_00333at 369.729 kb on + strand, within ECD_00333at 369.730 kb on - strand, within ECD_00333at 369.730 kb on - strand, within ECD_00333at 369.737 kb on + strand, within ECD_00333at 369.793 kb on + strand, within ECD_00333at 369.823 kb on - strand, within ECD_00333at 370.006 kb on - strand, within ECD_00333at 370.006 kb on - strand, within ECD_00333at 370.166 kb on + strand, within ECD_00333at 370.167 kb on - strand, within ECD_00333at 370.167 kb on - strand, within ECD_00333at 370.249 kb on - strandat 370.322 kb on + strandat 370.322 kb on + strandat 370.332 kb on + strandat 370.389 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_10
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367,532 - ECD_00330 0.82 +0.4
367,532 - ECD_00330 0.82 -1.6
367,611 - ECD_00330 0.88 +0.5
367,641 + ECD_00330 0.90 -0.4
367,641 + ECD_00330 0.90 -0.4
367,755 + +0.0
367,756 - -0.6
367,849 + -0.4
367,906 - -0.8
367,926 + -1.4
367,926 + -0.5
367,926 + -1.2
367,927 - -1.1
368,001 + ECD_00331 0.30 -0.6
368,002 - ECD_00331 0.30 -2.9
368,002 - ECD_00331 0.30 -0.4
368,002 - ECD_00331 0.30 -1.0
368,062 + ECD_00331 0.49 +0.2
368,063 - ECD_00331 0.49 +0.1
368,146 - ECD_00331 0.75 -0.1
368,187 + ECD_00331 0.88 +0.5
368,196 + +1.1
368,197 - -1.6
368,197 - -1.5
368,305 + -0.5
368,306 - +0.3
368,575 + ECD_00332 0.22 +0.4
368,613 - ECD_00332 0.26 +0.2
368,633 - ECD_00332 0.27 -0.3
368,714 + ECD_00332 0.35 +0.7
368,714 + ECD_00332 0.35 +0.6
368,867 + ECD_00332 0.48 -3.6
368,878 - ECD_00332 0.49 -1.4
368,982 + ECD_00332 0.59 +0.2
368,983 - ECD_00332 0.59 -1.3
368,983 - ECD_00332 0.59 -0.5
369,005 + ECD_00332 0.61 -0.1
369,005 + ECD_00332 0.61 +0.4
369,005 + ECD_00332 0.61 +0.9
369,006 - ECD_00332 0.61 +0.5
369,396 + -1.0
369,589 - ECD_00333 0.16 -0.1
369,589 - ECD_00333 0.16 -0.1
369,589 - ECD_00333 0.16 +0.3
369,589 - ECD_00333 0.16 -2.4
369,647 - ECD_00333 0.23 -0.1
369,729 + ECD_00333 0.33 -0.4
369,729 + ECD_00333 0.33 -1.0
369,729 + ECD_00333 0.33 -0.1
369,730 - ECD_00333 0.33 +0.3
369,730 - ECD_00333 0.33 +0.5
369,737 + ECD_00333 0.34 -1.6
369,793 + ECD_00333 0.41 -2.3
369,823 - ECD_00333 0.45 +0.9
370,006 - ECD_00333 0.67 +1.4
370,006 - ECD_00333 0.67 -0.6
370,166 + ECD_00333 0.87 -3.7
370,167 - ECD_00333 0.87 -0.9
370,167 - ECD_00333 0.87 -1.7
370,249 - +0.1
370,322 + -0.0
370,322 + -0.2
370,332 + -0.3
370,389 - +0.4

Or see this region's nucleotide sequence