Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00260 and ECD_00261 are separated by 225 nucleotides ECD_00261 and ECD_00262 are separated by 526 nucleotides
ECD_00260: ECD_00260 - reactive chlorine stress species (RCS) resistance protein; pyridine nucleotide-dependent disulfide oxidoreductase family, at 288,304 to 289,629
_00260
ECD_00261: ECD_00261 - reactive chlorine species (RCS)-specific activator of the rcl genes, at 289,855 to 290,709
_00261
ECD_00262: ECD_00262 - cysteine-rich LutA family protein; putative electron transport chain YkgEFG component, at 291,236 to 291,955
_00262
Position (kb) 289
290
291 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 288.889 kb on + strand, within ECD_00260 at 289.514 kb on + strand at 289.922 kb on + strand at 290.037 kb on - strand, within ECD_00261 at 290.212 kb on + strand, within ECD_00261 at 290.349 kb on + strand, within ECD_00261 at 290.402 kb on + strand, within ECD_00261 at 290.402 kb on + strand, within ECD_00261 at 291.205 kb on + strand at 291.231 kb on + strand at 291.389 kb on - strand, within ECD_00262 at 291.454 kb on + strand, within ECD_00262 at 291.479 kb on + strand, within ECD_00262 at 291.688 kb on + strand, within ECD_00262 at 291.689 kb on - strand, within ECD_00262
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_10 remove 288,889 + ECD_00260 0.44 -1.3 289,514 + -1.0 289,922 + +0.1 290,037 - ECD_00261 0.21 -2.5 290,212 + ECD_00261 0.42 -2.4 290,349 + ECD_00261 0.58 -1.0 290,402 + ECD_00261 0.64 -2.4 290,402 + ECD_00261 0.64 -0.9 291,205 + +1.3 291,231 + +0.6 291,389 - ECD_00262 0.21 -1.3 291,454 + ECD_00262 0.30 -0.3 291,479 + ECD_00262 0.34 +0.5 291,688 + ECD_00262 0.63 +1.3 291,689 - ECD_00262 0.63 -3.9
Or see this region's nucleotide sequence