Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00235 and ECD_00236 are separated by 125 nucleotides ECD_00236 and ECD_00237 overlap by 82 nucleotides ECD_00237 and ECD_00238 are separated by 10 nucleotides ECD_00238 and ECD_00239 are separated by 287 nucleotides
ECD_00235: ECD_00235 - DNA-binding transcriptional regulator, at 262,323 to 262,724
_00235
ECD_00236: ECD_00236 - IS1 protein InsA, at 262,850 to 263,125
_00236
ECD_00237: ECD_00237 - IS1 protein InsB, at 263,044 to 263,547
_00237
ECD_00238: ECD_00238 - outer membrane phosphoporin protein E, at 263,558 to 264,595
_00238
ECD_00239: ECD_00239 - gamma-glutamate kinase, at 264,883 to 265,986
_00239
Position (kb) 263
264
265 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 262.765 kb on - strand at 262.825 kb on - strand at 263.644 kb on + strand at 263.682 kb on + strand, within ECD_00238 at 263.739 kb on + strand, within ECD_00238 at 263.971 kb on + strand, within ECD_00238 at 263.983 kb on + strand, within ECD_00238 at 264.013 kb on - strand, within ECD_00238 at 264.238 kb on - strand, within ECD_00238 at 264.238 kb on - strand, within ECD_00238 at 264.467 kb on - strand, within ECD_00238 at 264.573 kb on - strand at 264.727 kb on + strand at 264.849 kb on + strand at 264.908 kb on + strand at 264.908 kb on + strand at 264.929 kb on + strand at 264.995 kb on + strand, within ECD_00239 at 265.163 kb on - strand, within ECD_00239 at 265.204 kb on - strand, within ECD_00239 at 265.266 kb on + strand, within ECD_00239 at 265.314 kb on + strand, within ECD_00239 at 265.314 kb on + strand, within ECD_00239 at 265.315 kb on - strand, within ECD_00239 at 265.406 kb on - strand, within ECD_00239 at 265.446 kb on + strand, within ECD_00239 at 265.446 kb on + strand, within ECD_00239 at 265.446 kb on + strand, within ECD_00239
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_10 remove 262,765 - -0.2 262,825 - -1.4 263,644 + -2.4 263,682 + ECD_00238 0.12 -1.9 263,739 + ECD_00238 0.17 -3.3 263,971 + ECD_00238 0.40 -0.1 263,983 + ECD_00238 0.41 -1.3 264,013 - ECD_00238 0.44 -0.4 264,238 - ECD_00238 0.66 -0.6 264,238 - ECD_00238 0.66 -0.6 264,467 - ECD_00238 0.88 -0.4 264,573 - +0.1 264,727 + +0.2 264,849 + +1.2 264,908 + +0.1 264,908 + +0.8 264,929 + -0.2 264,995 + ECD_00239 0.10 +1.2 265,163 - ECD_00239 0.25 -1.6 265,204 - ECD_00239 0.29 -0.9 265,266 + ECD_00239 0.35 +0.5 265,314 + ECD_00239 0.39 +0.1 265,314 + ECD_00239 0.39 +0.4 265,315 - ECD_00239 0.39 -0.8 265,406 - ECD_00239 0.47 -2.1 265,446 + ECD_00239 0.51 +1.1 265,446 + ECD_00239 0.51 +1.4 265,446 + ECD_00239 0.51 +0.1
Or see this region's nucleotide sequence