Strain Fitness in Escherichia coli BL21 around ECD_00232

Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00230 and ECD_00231 overlap by 32 nucleotidesECD_00231 and ECD_00232 are separated by 56 nucleotidesECD_00232 and ECD_00233 are separated by 260 nucleotidesECD_00233 and ECD_00234 are separated by 91 nucleotides ECD_00230: ECD_00230 - hypothetical protein, at 257,961 to 258,227 _00230 ECD_00231: ECD_00231 - peptide chain release factor 2, at 258,196 to 258,696 _00231 ECD_00232: ECD_00232 - aminoacyl-histidine dipeptidase (peptidase D), at 258,753 to 260,210 _00232 ECD_00233: ECD_00233 - xanthine phosphoribosyltransferase; xanthine-guanine phosphoribosyltransferase, at 260,471 to 260,929 _00233 ECD_00234: ECD_00234 - fermentation-respiration switch protein; PTS Enzyme IIA(Glc)-binding protein; pNP-butyrate esterase activity, at 261,021 to 262,265 _00234 Position (kb) 258 259 260 261Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 257.958 kb on + strandat 257.970 kb on + strandat 258.061 kb on + strand, within ECD_00230at 258.062 kb on - strand, within ECD_00230at 258.279 kb on - strand, within ECD_00231at 258.301 kb on - strand, within ECD_00231at 258.375 kb on + strand, within ECD_00231at 258.456 kb on + strand, within ECD_00231at 258.685 kb on - strandat 258.808 kb on - strandat 258.854 kb on + strandat 258.855 kb on - strandat 258.867 kb on - strandat 258.968 kb on - strand, within ECD_00232at 258.979 kb on - strand, within ECD_00232at 259.091 kb on - strand, within ECD_00232at 259.097 kb on + strand, within ECD_00232at 259.287 kb on - strand, within ECD_00232at 259.297 kb on - strand, within ECD_00232at 259.363 kb on + strand, within ECD_00232at 259.364 kb on - strand, within ECD_00232at 259.364 kb on - strand, within ECD_00232at 259.367 kb on + strand, within ECD_00232at 259.367 kb on + strand, within ECD_00232at 259.368 kb on - strand, within ECD_00232at 259.579 kb on - strand, within ECD_00232at 259.587 kb on + strand, within ECD_00232at 259.594 kb on - strand, within ECD_00232at 259.681 kb on + strand, within ECD_00232at 259.682 kb on - strand, within ECD_00232at 259.853 kb on + strand, within ECD_00232at 259.913 kb on + strand, within ECD_00232at 259.913 kb on + strand, within ECD_00232at 259.913 kb on + strand, within ECD_00232at 259.914 kb on - strand, within ECD_00232at 259.914 kb on - strand, within ECD_00232at 259.914 kb on - strand, within ECD_00232at 259.914 kb on - strand, within ECD_00232at 259.915 kb on + strand, within ECD_00232at 259.916 kb on - strand, within ECD_00232at 259.916 kb on - strand, within ECD_00232at 259.916 kb on - strand, within ECD_00232at 260.037 kb on - strand, within ECD_00232at 260.051 kb on + strand, within ECD_00232at 260.052 kb on - strand, within ECD_00232at 260.052 kb on - strand, within ECD_00232at 260.056 kb on - strand, within ECD_00232at 260.107 kb on + strandat 260.108 kb on - strandat 260.131 kb on + strandat 260.147 kb on + strandat 260.148 kb on - strandat 260.148 kb on - strandat 260.191 kb on - strandat 260.213 kb on + strandat 260.213 kb on + strandat 260.302 kb on - strandat 260.302 kb on - strandat 260.314 kb on - strandat 260.314 kb on - strandat 260.400 kb on - strandat 260.400 kb on - strandat 260.401 kb on + strandat 260.450 kb on - strandat 260.648 kb on - strand, within ECD_00233at 260.657 kb on + strand, within ECD_00233at 260.658 kb on - strand, within ECD_00233at 260.683 kb on + strand, within ECD_00233at 260.755 kb on + strand, within ECD_00233at 260.843 kb on + strand, within ECD_00233at 260.843 kb on + strand, within ECD_00233at 260.969 kb on - strandat 260.983 kb on + strandat 260.989 kb on - strandat 260.989 kb on - strandat 261.003 kb on - strandat 261.003 kb on - strandat 261.144 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_10
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257,958 + +0.3
257,970 + -0.9
258,061 + ECD_00230 0.37 -1.1
258,062 - ECD_00230 0.38 -3.5
258,279 - ECD_00231 0.17 -4.0
258,301 - ECD_00231 0.21 -1.2
258,375 + ECD_00231 0.36 -0.5
258,456 + ECD_00231 0.52 -0.4
258,685 - -2.1
258,808 - -0.7
258,854 + -0.4
258,855 - -0.1
258,867 - -1.0
258,968 - ECD_00232 0.15 -1.0
258,979 - ECD_00232 0.16 -0.1
259,091 - ECD_00232 0.23 -1.3
259,097 + ECD_00232 0.24 -1.7
259,287 - ECD_00232 0.37 -0.8
259,297 - ECD_00232 0.37 +0.4
259,363 + ECD_00232 0.42 -2.6
259,364 - ECD_00232 0.42 -0.7
259,364 - ECD_00232 0.42 -0.3
259,367 + ECD_00232 0.42 -0.3
259,367 + ECD_00232 0.42 -1.8
259,368 - ECD_00232 0.42 -0.1
259,579 - ECD_00232 0.57 -0.3
259,587 + ECD_00232 0.57 -1.2
259,594 - ECD_00232 0.58 -0.2
259,681 + ECD_00232 0.64 -1.4
259,682 - ECD_00232 0.64 -0.1
259,853 + ECD_00232 0.75 -1.8
259,913 + ECD_00232 0.80 -0.7
259,913 + ECD_00232 0.80 -0.6
259,913 + ECD_00232 0.80 +0.6
259,914 - ECD_00232 0.80 +0.4
259,914 - ECD_00232 0.80 +0.2
259,914 - ECD_00232 0.80 +0.3
259,914 - ECD_00232 0.80 -0.3
259,915 + ECD_00232 0.80 -1.8
259,916 - ECD_00232 0.80 -0.0
259,916 - ECD_00232 0.80 -1.0
259,916 - ECD_00232 0.80 +0.7
260,037 - ECD_00232 0.88 -0.9
260,051 + ECD_00232 0.89 -2.0
260,052 - ECD_00232 0.89 -1.9
260,052 - ECD_00232 0.89 -0.6
260,056 - ECD_00232 0.89 -0.8
260,107 + -0.5
260,108 - +0.6
260,131 + -0.4
260,147 + -1.0
260,148 - -0.4
260,148 - +0.1
260,191 - -0.5
260,213 + +0.2
260,213 + -0.8
260,302 - +0.9
260,302 - +0.2
260,314 - -0.2
260,314 - -0.4
260,400 - -2.4
260,400 - -0.4
260,401 + -2.0
260,450 - -0.3
260,648 - ECD_00233 0.39 -0.6
260,657 + ECD_00233 0.41 +1.1
260,658 - ECD_00233 0.41 +0.8
260,683 + ECD_00233 0.46 +0.7
260,755 + ECD_00233 0.62 +0.5
260,843 + ECD_00233 0.81 +0.2
260,843 + ECD_00233 0.81 +0.9
260,969 - -0.9
260,983 + -1.4
260,989 - -0.0
260,989 - -1.3
261,003 - -1.0
261,003 - -1.6
261,144 - -0.0

Or see this region's nucleotide sequence