Strain Fitness in Escherichia coli BL21 around ECD_00222

Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00219 and ECD_00220 are separated by 155 nucleotidesECD_00220 and ECD_00221 are separated by 2 nucleotidesECD_00221 and ECD_00222 are separated by 209 nucleotidesECD_00222 and ECD_00223 are separated by 175 nucleotides ECD_00219: ECD_00219 - L,D-transpeptidase-related protein, at 249,639 to 250,379 _00219 ECD_00220: ECD_00220 - mRNA interferase toxin of toxin-antitoxin pair YafQ/DinJ, at 250,535 to 250,813 _00220 ECD_00221: ECD_00221 - antitoxin of YafQ-DinJ toxin-antitoxin system, at 250,816 to 251,076 _00221 ECD_00222: ECD_00222 - putative lipoprotein and C40 family peptidase, at 251,286 to 252,035 _00222 ECD_00223: ECD_00223 - RAYT REP element-mobilizing transposase; TnpA(REP), at 252,211 to 252,708 _00223 Position (kb) 251 252 253Strain fitness (log2 ratio) -3 -2 -1 0 1at 250.304 kb on + strand, within ECD_00219at 250.305 kb on - strand, within ECD_00219at 250.305 kb on - strand, within ECD_00219at 250.363 kb on - strandat 250.386 kb on + strandat 250.387 kb on - strandat 250.470 kb on - strandat 250.599 kb on + strand, within ECD_00220at 251.097 kb on - strandat 251.097 kb on - strandat 251.221 kb on + strandat 251.378 kb on + strand, within ECD_00222at 251.379 kb on - strand, within ECD_00222at 251.379 kb on - strand, within ECD_00222at 251.432 kb on - strand, within ECD_00222at 251.469 kb on + strand, within ECD_00222at 251.469 kb on + strand, within ECD_00222at 251.469 kb on + strand, within ECD_00222at 251.470 kb on - strand, within ECD_00222at 251.470 kb on - strand, within ECD_00222at 251.633 kb on + strand, within ECD_00222at 251.686 kb on - strand, within ECD_00222at 251.748 kb on + strand, within ECD_00222at 251.749 kb on - strand, within ECD_00222at 251.781 kb on - strand, within ECD_00222at 251.796 kb on + strand, within ECD_00222at 251.796 kb on + strand, within ECD_00222at 251.796 kb on + strand, within ECD_00222at 251.796 kb on + strand, within ECD_00222at 251.797 kb on - strand, within ECD_00222at 251.797 kb on - strand, within ECD_00222at 251.797 kb on - strand, within ECD_00222at 251.797 kb on - strand, within ECD_00222at 251.797 kb on - strand, within ECD_00222at 251.797 kb on - strand, within ECD_00222at 251.797 kb on - strand, within ECD_00222at 251.797 kb on - strand, within ECD_00222at 251.891 kb on + strand, within ECD_00222at 251.892 kb on - strand, within ECD_00222at 251.902 kb on - strand, within ECD_00222at 251.902 kb on - strand, within ECD_00222at 252.150 kb on - strandat 252.188 kb on - strandat 252.232 kb on + strandat 252.232 kb on + strandat 252.233 kb on - strandat 252.407 kb on + strand, within ECD_00223at 252.407 kb on + strand, within ECD_00223at 252.535 kb on + strand, within ECD_00223at 252.556 kb on - strand, within ECD_00223at 252.556 kb on - strand, within ECD_00223at 252.560 kb on - strand, within ECD_00223at 252.644 kb on + strand, within ECD_00223at 252.644 kb on + strand, within ECD_00223at 252.644 kb on + strand, within ECD_00223at 252.672 kb on - strandat 252.680 kb on + strandat 252.680 kb on + strandat 252.681 kb on - strandat 252.705 kb on - strandat 252.705 kb on - strandat 252.815 kb on + strandat 252.815 kb on + strandat 252.815 kb on + strandat 252.815 kb on + strandat 252.815 kb on + strandat 252.816 kb on - strandat 252.824 kb on + strandat 252.916 kb on + strandat 252.926 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_10
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250,304 + ECD_00219 0.90 -2.8
250,305 - ECD_00219 0.90 -2.0
250,305 - ECD_00219 0.90 +0.3
250,363 - -0.1
250,386 + -3.7
250,387 - +0.5
250,470 - -0.1
250,599 + ECD_00220 0.23 -2.8
251,097 - -0.2
251,097 - +0.5
251,221 + -1.0
251,378 + ECD_00222 0.12 -0.8
251,379 - ECD_00222 0.12 -0.7
251,379 - ECD_00222 0.12 -1.0
251,432 - ECD_00222 0.19 +0.0
251,469 + ECD_00222 0.24 -0.3
251,469 + ECD_00222 0.24 -1.1
251,469 + ECD_00222 0.24 -0.3
251,470 - ECD_00222 0.25 -0.0
251,470 - ECD_00222 0.25 -0.7
251,633 + ECD_00222 0.46 -0.9
251,686 - ECD_00222 0.53 -0.4
251,748 + ECD_00222 0.62 -0.6
251,749 - ECD_00222 0.62 -2.7
251,781 - ECD_00222 0.66 -2.7
251,796 + ECD_00222 0.68 -1.7
251,796 + ECD_00222 0.68 -1.6
251,796 + ECD_00222 0.68 -0.6
251,796 + ECD_00222 0.68 -2.3
251,797 - ECD_00222 0.68 -0.5
251,797 - ECD_00222 0.68 -0.7
251,797 - ECD_00222 0.68 -1.7
251,797 - ECD_00222 0.68 -1.3
251,797 - ECD_00222 0.68 -0.7
251,797 - ECD_00222 0.68 -0.5
251,797 - ECD_00222 0.68 -1.8
251,797 - ECD_00222 0.68 -2.1
251,891 + ECD_00222 0.81 -0.8
251,892 - ECD_00222 0.81 +1.0
251,902 - ECD_00222 0.82 -1.0
251,902 - ECD_00222 0.82 -1.0
252,150 - -0.3
252,188 - +0.3
252,232 + -0.8
252,232 + -0.8
252,233 - -1.0
252,407 + ECD_00223 0.39 -0.6
252,407 + ECD_00223 0.39 -1.4
252,535 + ECD_00223 0.65 -0.6
252,556 - ECD_00223 0.69 -1.2
252,556 - ECD_00223 0.69 -0.0
252,560 - ECD_00223 0.70 -0.5
252,644 + ECD_00223 0.87 -0.2
252,644 + ECD_00223 0.87 +0.1
252,644 + ECD_00223 0.87 -1.3
252,672 - -0.5
252,680 + +0.3
252,680 + +0.4
252,681 - -1.4
252,705 - -1.4
252,705 - -2.1
252,815 + -0.5
252,815 + -0.2
252,815 + -0.8
252,815 + +0.1
252,815 + -1.0
252,816 - -0.3
252,824 + -1.0
252,916 + -2.2
252,926 - +0.3

Or see this region's nucleotide sequence