Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00217 and ECD_00218 are separated by 205 nucleotides ECD_00218 and ECD_00219 overlap by 30 nucleotides ECD_00219 and ECD_00220 are separated by 155 nucleotides
ECD_00217: ECD_00217 - D-sedoheptulose 7-phosphate isomerase, at 248,117 to 248,695
_00217
ECD_00218: ECD_00218 - type 2 glutamine amidotransferase family protein, at 248,901 to 249,668
_00218
ECD_00219: ECD_00219 - L,D-transpeptidase-related protein, at 249,639 to 250,379
_00219
ECD_00220: ECD_00220 - mRNA interferase toxin of toxin-antitoxin pair YafQ/DinJ, at 250,535 to 250,813
_00220
Position (kb) 248
249
250 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 247.951 kb on - strand at 247.974 kb on - strand at 248.092 kb on + strand at 248.121 kb on - strand at 248.377 kb on + strand, within ECD_00217 at 248.776 kb on - strand at 248.968 kb on + strand at 248.968 kb on + strand at 248.968 kb on + strand at 248.996 kb on + strand, within ECD_00218 at 248.997 kb on - strand, within ECD_00218 at 249.021 kb on + strand, within ECD_00218 at 249.048 kb on - strand, within ECD_00218 at 249.068 kb on + strand, within ECD_00218 at 249.213 kb on + strand, within ECD_00218 at 249.213 kb on + strand, within ECD_00218 at 249.374 kb on + strand, within ECD_00218 at 249.442 kb on - strand, within ECD_00218 at 249.442 kb on - strand, within ECD_00218 at 249.446 kb on - strand, within ECD_00218 at 249.446 kb on - strand, within ECD_00218 at 249.446 kb on - strand, within ECD_00218 at 249.465 kb on - strand, within ECD_00218 at 249.661 kb on + strand at 249.662 kb on - strand at 249.719 kb on - strand, within ECD_00219 at 249.753 kb on - strand, within ECD_00219 at 249.817 kb on + strand, within ECD_00219 at 249.818 kb on - strand, within ECD_00219 at 249.863 kb on + strand, within ECD_00219 at 249.863 kb on + strand, within ECD_00219 at 249.989 kb on - strand, within ECD_00219 at 250.019 kb on - strand, within ECD_00219 at 250.019 kb on - strand, within ECD_00219 at 250.038 kb on - strand, within ECD_00219 at 250.041 kb on - strand, within ECD_00219 at 250.051 kb on + strand, within ECD_00219 at 250.052 kb on - strand, within ECD_00219 at 250.208 kb on - strand, within ECD_00219 at 250.208 kb on - strand, within ECD_00219 at 250.221 kb on - strand, within ECD_00219 at 250.221 kb on - strand, within ECD_00219 at 250.274 kb on + strand, within ECD_00219 at 250.274 kb on + strand, within ECD_00219 at 250.275 kb on - strand, within ECD_00219 at 250.275 kb on - strand, within ECD_00219 at 250.275 kb on - strand, within ECD_00219 at 250.275 kb on - strand, within ECD_00219 at 250.275 kb on - strand, within ECD_00219 at 250.304 kb on + strand, within ECD_00219 at 250.305 kb on - strand, within ECD_00219 at 250.305 kb on - strand, within ECD_00219 at 250.363 kb on - strand at 250.386 kb on + strand at 250.387 kb on - strand at 250.470 kb on - strand at 250.599 kb on + strand, within ECD_00220
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_10 remove 247,951 - -0.4 247,974 - -0.9 248,092 + -0.3 248,121 - -1.2 248,377 + ECD_00217 0.45 -1.2 248,776 - -2.5 248,968 + -0.2 248,968 + -0.1 248,968 + -1.0 248,996 + ECD_00218 0.12 -1.3 248,997 - ECD_00218 0.12 -0.6 249,021 + ECD_00218 0.16 -0.4 249,048 - ECD_00218 0.19 -4.0 249,068 + ECD_00218 0.22 +0.5 249,213 + ECD_00218 0.41 +0.1 249,213 + ECD_00218 0.41 -0.6 249,374 + ECD_00218 0.62 +0.4 249,442 - ECD_00218 0.70 +0.3 249,442 - ECD_00218 0.70 -0.4 249,446 - ECD_00218 0.71 -1.5 249,446 - ECD_00218 0.71 -2.3 249,446 - ECD_00218 0.71 -2.4 249,465 - ECD_00218 0.73 -1.9 249,661 + -0.0 249,662 - -0.6 249,719 - ECD_00219 0.11 +0.9 249,753 - ECD_00219 0.15 -0.8 249,817 + ECD_00219 0.24 +2.2 249,818 - ECD_00219 0.24 +0.4 249,863 + ECD_00219 0.30 -0.8 249,863 + ECD_00219 0.30 -2.1 249,989 - ECD_00219 0.47 -0.3 250,019 - ECD_00219 0.51 -0.5 250,019 - ECD_00219 0.51 -0.8 250,038 - ECD_00219 0.54 -0.8 250,041 - ECD_00219 0.54 -0.7 250,051 + ECD_00219 0.56 -1.6 250,052 - ECD_00219 0.56 -1.7 250,208 - ECD_00219 0.77 +0.8 250,208 - ECD_00219 0.77 +0.2 250,221 - ECD_00219 0.79 -0.9 250,221 - ECD_00219 0.79 -0.1 250,274 + ECD_00219 0.86 -3.7 250,274 + ECD_00219 0.86 -2.4 250,275 - ECD_00219 0.86 +0.2 250,275 - ECD_00219 0.86 +0.3 250,275 - ECD_00219 0.86 +0.2 250,275 - ECD_00219 0.86 +0.3 250,275 - ECD_00219 0.86 +0.1 250,304 + ECD_00219 0.90 -2.7 250,305 - ECD_00219 0.90 -2.0 250,305 - ECD_00219 0.90 +0.3 250,363 - -0.1 250,386 + -3.7 250,387 - +0.5 250,470 - -0.1 250,599 + ECD_00220 0.23 -2.7
Or see this region's nucleotide sequence