Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00025 and ECD_00026 are separated by 296 nucleotides ECD_00026 and ECD_00027 are separated by 21 nucleotides ECD_00027 and ECD_00028 are separated by 102 nucleotides ECD_00028 and ECD_00029 are separated by 7 nucleotides ECD_00029 and ECD_00030 are separated by 42 nucleotides
ECD_00025: ECD_00025 - hypothetical protein, at 24,054 to 24,404
_00025
ECD_00026: ECD_00026 - hypothetical protein, at 24,701 to 24,865
_00026
ECD_00027: ECD_00027 - 30S ribosomal subunit protein S20, at 24,887 to 25,150
_00027
ECD_00028: ECD_00028 - uncharacterized protein, at 25,253 to 25,471
_00028
ECD_00029: ECD_00029 - bifunctional riboflavin kinase/FAD synthetase, at 25,479 to 26,420
_00029
ECD_00030: ECD_00030 - isoleucyl-tRNA synthetase, at 26,463 to 29,279
_00030
Position (kb) 25
26 Strain fitness (log2 ratio) -1
0
1 at 24.614 kb on + strand at 24.715 kb on + strand at 24.744 kb on + strand, within ECD_00026 at 24.744 kb on + strand, within ECD_00026 at 24.747 kb on + strand, within ECD_00026 at 25.241 kb on + strand at 25.273 kb on + strand at 25.274 kb on - strand at 25.437 kb on + strand, within ECD_00028 at 25.438 kb on - strand, within ECD_00028 at 25.438 kb on - strand, within ECD_00028 at 25.444 kb on + strand, within ECD_00028 at 25.444 kb on + strand, within ECD_00028 at 25.446 kb on + strand, within ECD_00028 at 26.427 kb on + strand at 26.427 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_10 remove 24,614 + +0.6 24,715 + +0.0 24,744 + ECD_00026 0.26 +0.6 24,744 + ECD_00026 0.26 -0.6 24,747 + ECD_00026 0.28 -0.2 25,241 + +0.9 25,273 + +0.5 25,274 - +1.1 25,437 + ECD_00028 0.84 +0.1 25,438 - ECD_00028 0.84 -0.6 25,438 - ECD_00028 0.84 -0.4 25,444 + ECD_00028 0.87 +0.7 25,444 + ECD_00028 0.87 +1.0 25,446 + ECD_00028 0.88 +1.0 26,427 + +0.9 26,427 + +0.5
Or see this region's nucleotide sequence