Strain Fitness in Pseudomonas putida KT2440 around PP_5561

Experiment: Cholinium aspartate 10 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cholinium aspartate 10 vol%
3,480,244	+		PP_3090	0.61	+0.2
3,480,244	+		PP_3090	0.61	+0.4
3,480,244	+		PP_3090	0.61	-0.5
3,480,244	+		PP_3090	0.61	+0.6
3,480,244	+		PP_3090	0.61	+0.5
3,480,244	+		PP_3090	0.61	-1.2
3,480,244	+		PP_3090	0.61	-0.9
3,480,245	-		PP_3090	0.61	+0.2
3,480,245	-		PP_3090	0.61	-0.0
3,480,366	+		PP_3090	0.66	+1.1
3,480,407	+		PP_3090	0.67	+0.3
3,480,668	+		PP_3090	0.78	-0.1
3,480,839	+		PP_3090	0.85	-0.1
3,480,854	+		PP_3090	0.85	+0.9
3,480,854	+		PP_3090	0.85	-0.2
3,480,854	+		PP_3090	0.85	+0.5
3,480,854	+		PP_3090	0.85	+1.1
3,480,854	+		PP_3090	0.85	+0.5
3,480,855	-		PP_3090	0.85	-0.4
3,480,855	-		PP_3090	0.85	+0.1
3,480,855	-		PP_3090	0.85	-0.7
3,481,048	+				-0.1
3,481,048	+				+0.6
3,481,048	+				-0.1
3,481,048	+				-0.2
3,481,048	+				+0.1
3,481,048	+				+0.2
3,481,052	+				-0.6
3,481,052	+				-1.0
3,481,053	-				+0.8
3,481,053	-				-0.0
3,481,178	+				+0.6
3,481,178	+				-0.0
3,481,178	+				+0.0
3,481,179	-				+1.7
3,481,179	-				-1.1
3,481,199	+				-0.2
3,481,199	+				+0.7
3,481,199	+				+0.2
3,481,203	-				+0.6
3,481,218	+				-0.0
3,481,280	-				+0.4
3,481,396	+		PP_5561	0.20	+0.1
3,481,396	+		PP_5561	0.20	-0.5
3,481,506	-		PP_5561	0.32	-0.6
3,481,506	-		PP_5561	0.32	-0.8
3,481,841	+		PP_5561	0.69	-0.1
3,481,841	+		PP_5561	0.69	-1.0
3,481,952	-		PP_5561	0.81	-0.7
3,482,430	+				-0.2
3,482,612	+		PP_3091	0.13	-0.4
3,482,613	-		PP_3091	0.13	+0.2
3,482,690	+		PP_3091	0.15	+0.4
3,482,690	+		PP_3091	0.15	-0.2
3,482,690	+		PP_3091	0.15	+0.3
3,482,691	-		PP_3091	0.15	-0.2
3,482,847	+		PP_3091	0.19	+0.1