Strain Fitness in Pseudomonas putida KT2440 around PP_5314

Experiment: Cholinium aspartate 10 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cholinium aspartate 10 vol%
6,060,571	-				+1.7
6,060,571	-				-0.7
6,060,693	+		PP_5312	0.39	-0.4
6,060,975	+				-0.6
6,061,145	+		PP_5313	0.26	+0.4
6,061,146	-		PP_5313	0.26	+0.0
6,061,146	-		PP_5313	0.26	+0.5
6,061,146	-		PP_5313	0.26	-2.4
6,061,367	+				-0.4
6,061,367	+				-0.2
6,061,368	-				+0.1
6,061,399	+				+0.4
6,061,400	-				-0.5
6,061,400	-				-0.8
6,061,445	+				+0.3
6,061,445	+				+0.5
6,061,445	+				-0.4
6,061,552	+				-0.3
6,061,557	-				-0.5
6,061,564	-				-1.1
6,061,626	-				-0.3
6,061,761	+		PP_5314	0.18	-0.6
6,061,762	-		PP_5314	0.18	+0.4
6,061,767	+		PP_5314	0.18	-0.7
6,061,767	+		PP_5314	0.18	-0.4
6,061,767	+				+1.2
6,061,767	+		PP_5314	0.18	+0.8
6,061,767	+		PP_5314	0.18	+0.2
6,061,847	+		PP_5314	0.25	+1.1
6,061,847	+		PP_5314	0.25	+0.2
6,061,847	+		PP_5314	0.25	+0.0
6,061,847	+		PP_5314	0.25	-1.7
6,061,847	+		PP_5314	0.25	-0.1
6,061,847	+		PP_5314	0.25	-0.4
6,061,847	+		PP_5314	0.25	+0.2
6,061,848	-		PP_5314	0.26	-0.2
6,061,911	+		PP_5314	0.31	-0.6
6,061,915	+		PP_5314	0.31	-0.3
6,061,916	-		PP_5314	0.31	+0.6
6,061,916	-		PP_5314	0.31	+0.2
6,061,927	+		PP_5314	0.32	-0.6
6,061,927	+		PP_5314	0.32	-0.3
6,061,928	-		PP_5314	0.32	+0.9
6,061,933	+		PP_5314	0.33	+0.0
6,061,977	+		PP_5314	0.37	-0.7
6,062,104	+		PP_5314	0.48	+0.5
6,062,104	+		PP_5314	0.48	+0.0
6,062,104	+		PP_5314	0.48	+0.2
6,062,105	-		PP_5314	0.48	+0.4
6,062,105	-		PP_5314	0.48	+0.4
6,062,105	-		PP_5314	0.48	-0.1
6,062,105	-		PP_5314	0.48	+0.3
6,062,105	-		PP_5314	0.48	-0.1
6,062,306	+		PP_5314	0.65	+0.2
6,062,306	+		PP_5314	0.65	+0.3
6,062,306	+		PP_5314	0.65	+0.7
6,062,307	-		PP_5314	0.65	-0.5
6,062,307	-		PP_5314	0.65	-0.2
6,062,332	+		PP_5314	0.68	-0.2
6,062,406	-		PP_5314	0.74	-0.8
6,062,686	+				+0.1
6,062,686	+				+0.3
6,062,686	+				+2.2
6,062,686	+				+0.1
6,062,687	-				+0.2
6,062,722	-				+0.1
6,062,850	+		PP_5315	0.77	+0.7
6,062,851	-		PP_5315	0.78	-0.7
6,062,869	+		PP_5315	0.89	+1.3
6,062,869	+		PP_5315	0.89	+0.9
6,062,869	+		PP_5315	0.89	-0.4
6,062,869	+		PP_5315	0.89	+0.2
6,062,869	+		PP_5315	0.89	+0.9
6,062,894	+				-0.8
6,062,894	+				-0.3
6,062,895	-				+0.6
6,062,895	-				-1.0
6,062,959	+				+0.1
6,062,960	-				-0.6
6,062,960	-				-0.2
6,063,046	+				-0.5
6,063,046	+				+0.3
6,063,046	+				-0.4
6,063,047	-				-1.1
6,063,072	+				+0.4
6,063,072	+				+0.4
6,063,072	+				-0.1
6,063,073	-				+2.2
6,063,095	+				-0.4
6,063,095	+				+0.3
6,063,118	+				+0.2
6,063,118	+				-0.5
6,063,358	+		PP_5317	0.44	+0.2
6,063,359	-		PP_5317	0.44	-1.0
6,063,359	-		PP_5317	0.44	-0.6
6,063,523	+		PP_5317	0.74	-0.2
6,063,524	-		PP_5317	0.74	-0.2