Experiment: Cholinium aspartate 10 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_5036 and PP_5037 are separated by 70 nucleotides PP_5037 and PP_5038 overlap by 4 nucleotides PP_5038 and PP_5039 are separated by 227 nucleotides PP_5039 and PP_5040 are separated by 3 nucleotides
PP_5036: PP_5036 - probable formiminoglutamate deiminase, at 5,739,071 to 5,740,435
_5036
PP_5037: PP_5037 - lipocalin family lipoprotein, at 5,740,506 to 5,741,078
_5037
PP_5038: PP_5038 - conserved lipoprotein of unknown function, at 5,741,075 to 5,741,329
_5038
PP_5039: PP_5039 - conserved protein of unknown function, at 5,741,557 to 5,742,153
_5039
PP_5040: PP_5040 - fructose-1,6-bisphosphatase, class 1, at 5,742,157 to 5,743,167
_5040
Position (kb) 5741
5742 Strain fitness (log2 ratio) -1
0
1
2
3 at 5740.079 kb on + strand, within PP_5036 at 5740.154 kb on + strand, within PP_5036 at 5740.154 kb on + strand, within PP_5036 at 5740.155 kb on - strand, within PP_5036 at 5740.259 kb on + strand, within PP_5036 at 5740.259 kb on + strand, within PP_5036 at 5740.519 kb on - strand at 5740.521 kb on + strand at 5740.645 kb on + strand, within PP_5037 at 5740.645 kb on + strand, within PP_5037 at 5740.645 kb on + strand, within PP_5037 at 5740.676 kb on + strand, within PP_5037 at 5740.677 kb on - strand, within PP_5037 at 5740.681 kb on + strand, within PP_5037 at 5740.681 kb on + strand, within PP_5037 at 5740.732 kb on - strand, within PP_5037 at 5740.732 kb on - strand, within PP_5037 at 5740.797 kb on - strand, within PP_5037 at 5740.861 kb on + strand, within PP_5037 at 5740.861 kb on + strand, within PP_5037 at 5740.861 kb on + strand, within PP_5037 at 5740.861 kb on + strand, within PP_5037 at 5740.885 kb on + strand, within PP_5037 at 5740.886 kb on - strand, within PP_5037 at 5740.945 kb on + strand, within PP_5037 at 5740.946 kb on - strand, within PP_5037 at 5741.065 kb on + strand at 5741.065 kb on + strand at 5741.065 kb on + strand at 5741.065 kb on + strand at 5741.065 kb on + strand at 5741.066 kb on - strand at 5741.098 kb on - strand at 5741.121 kb on + strand, within PP_5038 at 5741.122 kb on - strand, within PP_5038 at 5741.122 kb on - strand, within PP_5038 at 5741.233 kb on + strand, within PP_5038 at 5741.253 kb on + strand, within PP_5038 at 5741.253 kb on + strand, within PP_5038 at 5741.353 kb on + strand at 5741.353 kb on + strand at 5741.354 kb on - strand at 5741.354 kb on - strand at 5741.419 kb on + strand at 5741.420 kb on - strand at 5741.420 kb on - strand at 5741.420 kb on - strand at 5741.420 kb on - strand at 5741.427 kb on + strand at 5741.427 kb on + strand at 5741.490 kb on + strand at 5741.834 kb on + strand, within PP_5039 at 5741.915 kb on + strand, within PP_5039 at 5741.915 kb on + strand, within PP_5039 at 5742.050 kb on + strand, within PP_5039 at 5742.159 kb on - strand at 5742.159 kb on - strand at 5742.159 kb on - strand at 5742.159 kb on - strand at 5742.159 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cholinium aspartate 10 vol% remove 5,740,079 + PP_5036 0.74 +2.5 5,740,154 + PP_5036 0.79 -1.2 5,740,154 + PP_5036 0.79 -0.5 5,740,155 - PP_5036 0.79 -0.2 5,740,259 + PP_5036 0.87 +0.3 5,740,259 + PP_5036 0.87 +0.3 5,740,519 - -0.4 5,740,521 + -1.2 5,740,645 + PP_5037 0.24 -0.0 5,740,645 + PP_5037 0.24 -0.0 5,740,645 + PP_5037 0.24 -0.2 5,740,676 + PP_5037 0.30 -0.1 5,740,677 - PP_5037 0.30 +0.0 5,740,681 + PP_5037 0.31 -0.2 5,740,681 + PP_5037 0.31 +0.7 5,740,732 - PP_5037 0.39 +0.7 5,740,732 - PP_5037 0.39 +0.6 5,740,797 - PP_5037 0.51 +0.5 5,740,861 + PP_5037 0.62 +0.9 5,740,861 + PP_5037 0.62 +0.1 5,740,861 + PP_5037 0.62 +0.5 5,740,861 + PP_5037 0.62 -0.0 5,740,885 + PP_5037 0.66 -0.4 5,740,886 - PP_5037 0.66 -0.7 5,740,945 + PP_5037 0.77 -0.4 5,740,946 - PP_5037 0.77 -0.7 5,741,065 + +0.6 5,741,065 + +3.2 5,741,065 + +0.1 5,741,065 + -0.9 5,741,065 + -0.4 5,741,066 - +0.4 5,741,098 - +1.0 5,741,121 + PP_5038 0.18 +0.1 5,741,122 - PP_5038 0.18 -0.2 5,741,122 - PP_5038 0.18 +0.3 5,741,233 + PP_5038 0.62 -0.2 5,741,253 + PP_5038 0.70 -0.7 5,741,253 + PP_5038 0.70 -0.3 5,741,353 + -0.6 5,741,353 + +0.2 5,741,354 - -0.2 5,741,354 - +0.0 5,741,419 + +0.3 5,741,420 - +0.8 5,741,420 - -0.3 5,741,420 - +0.3 5,741,420 - +0.1 5,741,427 + +0.3 5,741,427 + +0.3 5,741,490 + -1.0 5,741,834 + PP_5039 0.46 -0.3 5,741,915 + PP_5039 0.60 -0.2 5,741,915 + PP_5039 0.60 -0.7 5,742,050 + PP_5039 0.83 -0.1 5,742,159 - -0.3 5,742,159 - +0.8 5,742,159 - -0.4 5,742,159 - +0.5 5,742,159 - +0.3
Or see this region's nucleotide sequence