Strain Fitness in Pseudomonas putida KT2440 around PP_3591

Experiment: Cholinium aspartate 10 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cholinium aspartate 10 vol%
4,080,022	+		PP_3590	0.37	-0.5
4,080,098	-		PP_3590	0.43	-0.4
4,080,250	-		PP_3590	0.56	-0.3
4,080,328	+		PP_3590	0.62	-0.3
4,080,328	+		PP_3590	0.62	-0.8
4,080,481	-		PP_3590	0.75	-1.1
4,080,580	+		PP_3590	0.84	+0.1
4,080,580	+		PP_3590	0.84	+0.7
4,080,581	-		PP_3590	0.84	+0.3
4,080,668	-				+0.0
4,080,668	-				-0.7
4,080,671	-				-0.1
4,080,671	-				-0.2
4,080,681	-				+0.3
4,080,754	+				+0.8
4,080,755	-				+0.2
4,080,856	+				-0.7
4,080,873	+				-0.5
4,080,873	+				-0.9
4,080,874	-				+0.7
4,081,335	+		PP_3591	0.40	+0.8
4,081,335	+		PP_3591	0.40	+0.5
4,081,711	+		PP_3591	0.77	+0.1
4,081,712	-		PP_3591	0.77	-0.3
4,081,712	-		PP_3591	0.77	+0.1
4,081,783	+		PP_3591	0.84	+1.3
4,081,783	+		PP_3591	0.84	+1.3
4,081,783	+		PP_3591	0.84	-0.1
4,081,811	+		PP_3591	0.87	+0.9
4,081,922	+				-0.1
4,081,994	+				-1.4
4,081,994	+				+1.1
4,082,182	+		PP_3592	0.14	-0.6
4,082,182	+		PP_3592	0.14	+0.3
4,082,182	+		PP_3592	0.14	+0.2
4,082,182	+		PP_3592	0.14	+0.0
4,082,182	+		PP_3592	0.14	-0.9
4,082,183	-		PP_3592	0.14	+0.5
4,082,183	-		PP_3592	0.14	+0.2
4,082,183	-		PP_3592	0.14	+0.6
4,082,183	-		PP_3592	0.14	-0.6
4,082,183	-		PP_3592	0.14	-0.2
4,082,183	-		PP_3592	0.14	-0.1
4,082,183	-		PP_3592	0.14	-0.5
4,082,183	-		PP_3592	0.14	+0.7
4,082,290	+		PP_3592	0.25	+0.0
4,082,290	+		PP_3592	0.25	+0.6
4,082,291	-		PP_3592	0.25	-1.1
4,082,311	-		PP_3592	0.28	-0.4
4,082,311	-		PP_3592	0.28	-0.5
4,082,375	-		PP_3592	0.35	+0.8
4,082,444	+		PP_3592	0.42	+0.4
4,082,572	+		PP_3592	0.56	+0.7
4,082,572	+		PP_3592	0.56	-0.7
4,082,572	+		PP_3592	0.56	+0.1
4,082,572	+		PP_3592	0.56	+0.8
4,082,573	-		PP_3592	0.56	+1.1
4,082,573	-		PP_3592	0.56	-0.8
4,082,573	-				-0.0
4,082,573	-		PP_3592	0.56	-0.2
4,082,680	+		PP_3592	0.68	+0.1
4,082,927	+				-0.7
4,082,927	+				+0.9