Strain Fitness in Pseudomonas putida KT2440 around PP_3555

Experiment: Cholinium aspartate 10 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cholinium aspartate 10 vol%
4,031,586	+		PP_3554	0.71	-0.5
4,031,586	+		PP_3554	0.71	-1.4
4,031,586	+		PP_3554	0.71	-0.1
4,031,587	-		PP_3554	0.71	-0.3
4,031,602	-		PP_3554	0.71	-0.6
4,031,602	-		PP_3554	0.71	-0.0
4,031,602	-		PP_3554	0.71	-0.7
4,031,602	-		PP_3554	0.71	+0.2
4,031,656	+		PP_3554	0.74	+0.2
4,031,658	+		PP_3554	0.75	+0.4
4,031,658	+		PP_3554	0.75	+0.8
4,031,658	+		PP_3554	0.75	+1.0
4,031,659	-		PP_3554	0.75	+0.7
4,031,659	-		PP_3554	0.75	+0.5
4,031,659	-		PP_3554	0.75	-0.6
4,031,767	+		PP_3554	0.81	+0.2
4,031,768	-		PP_3554	0.81	+0.1
4,031,768	-		PP_3554	0.81	+0.2
4,031,890	-		PP_3554	0.88	-0.3
4,031,890	-		PP_3554	0.88	+0.2
4,031,916	+		PP_3554	0.89	-0.9
4,031,917	-		PP_3554	0.89	-1.2
4,031,917	-		PP_3554	0.89	+0.2
4,031,917	-		PP_3554	0.89	-0.5
4,031,917	-		PP_3554	0.89	-0.9
4,031,922	+		PP_3554	0.89	+0.3
4,031,922	+		PP_3554	0.89	-1.3
4,031,922	+		PP_3554	0.89	-1.2
4,031,922	+		PP_3554	0.89	-0.0
4,031,922	+		PP_3554	0.89	+0.1
4,031,922	+		PP_3554	0.89	-0.3
4,031,922	+		PP_3554	0.89	-0.3
4,031,922	+		PP_3554	0.89	-0.1
4,031,922	+		PP_3554	0.89	+0.8
4,031,923	-		PP_3554	0.90	-0.1
4,031,923	-		PP_3554	0.90	-0.6
4,031,923	-		PP_3554	0.90	+1.1
4,031,923	-		PP_3554	0.90	+0.3
4,031,923	-		PP_3554	0.90	+0.0
4,031,923	-		PP_3554	0.90	+0.5
4,031,923	-		PP_3554	0.90	-1.0
4,031,923	-		PP_3554	0.90	+0.2
4,031,923	-		PP_3554	0.90	-0.9
4,031,923	-		PP_3554	0.90	+0.1
4,031,923	-		PP_3554	0.90	+0.6
4,032,012	+				-0.0
4,032,013	-				+0.6
4,032,081	+				+0.2
4,032,088	+				+0.3
4,032,264	-				-0.4
4,032,714	+		PP_3555	0.35	+0.9
4,032,715	-		PP_3555	0.35	-0.5
4,032,715	-		PP_3555	0.35	-0.6
4,032,775	+		PP_3555	0.41	-0.3
4,032,775	+		PP_3555	0.41	+0.5
4,032,813	+		PP_3555	0.45	+0.3
4,032,813	+		PP_3555	0.45	-0.3
4,032,814	-		PP_3555	0.45	+0.3
4,032,951	+		PP_3555	0.58	+0.9
4,033,098	+		PP_3555	0.73	-1.0
4,033,098	+		PP_3555	0.73	+0.2
4,033,099	-		PP_3555	0.73	+0.7
4,033,099	-		PP_3555	0.73	+0.1
4,033,099	-		PP_3555	0.73	-0.1
4,033,245	+		PP_3555	0.88	-0.1
4,033,246	-		PP_3555	0.88	+1.6
4,033,246	-		PP_3555	0.88	-0.5
4,033,246	-		PP_3555	0.88	+0.4
4,033,303	-				-0.1
4,033,385	+				+0.4
4,033,385	+				-1.5
4,033,386	-				-0.3
4,033,386	-				+0.7
4,033,386	-				+0.1
4,033,434	-				+1.7
4,033,434	-				-0.5
4,033,434	-				-0.4
4,033,560	+		PP_3556	0.13	-0.4
4,033,578	+		PP_3556	0.15	+0.3
4,033,579	-		PP_3556	0.15	-0.3
4,034,003	+		PP_3556	0.47	-0.6
4,034,003	+		PP_3556	0.47	-1.0
4,034,004	-		PP_3556	0.47	-0.0
4,034,048	+		PP_3556	0.50	-1.1
4,034,048	+		PP_3556	0.50	+0.5
4,034,049	-		PP_3556	0.50	+0.2
4,034,049	-		PP_3556	0.50	-0.3
4,034,231	+				-0.3
4,034,231	+		PP_3556	0.64	+0.8
4,034,231	+		PP_3556	0.64	-1.3
4,034,232	-		PP_3556	0.64	-0.6
4,034,232	-		PP_3556	0.64	-0.5
4,034,283	+		PP_3556	0.68	+0.1
4,034,304	-		PP_3556	0.70	-0.7
4,034,317	+		PP_3556	0.71	-0.0
4,034,318	-		PP_3556	0.71	+0.3