Strain Fitness in Pseudomonas putida KT2440 around PP_3081

Experiment: Cholinium aspartate 10 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cholinium aspartate 10 vol%
3,465,470	+		PP_3080	0.69	-0.5
3,465,470	+		PP_3080	0.69	-0.4
3,465,470	+		PP_3080	0.69	+1.1
3,465,471	-		PP_3080	0.69	+0.3
3,465,471	-		PP_3080	0.69	+0.9
3,465,471	-		PP_3080	0.69	+0.0
3,465,474	-		PP_3080	0.70	-1.3
3,465,491	-		PP_3080	0.71	-0.7
3,465,556	+		PP_3080	0.77	-0.2
3,465,556	+		PP_3080	0.77	-0.6
3,465,844	+				+0.6
3,465,876	-				+1.0
3,465,899	+				-0.0
3,465,900	-				+1.1
3,465,958	+				-0.3
3,465,959	-				+0.3
3,465,971	-				+0.6
3,465,971	-				+2.2
3,465,971	-				-0.1
3,465,974	-				-1.4
3,465,976	+				+1.1
3,465,976	+				-2.1
3,465,976	+				-0.4
3,465,976	+				+0.5
3,465,977	-				-0.5
3,465,977	-				-0.3
3,465,977	-				-0.9
3,465,985	+				+0.3
3,465,986	-				+1.1
3,466,137	+				-0.1
3,466,157	+		PP_5559	0.23	-0.4
3,466,278	-				+0.4
3,466,307	+				+0.9
3,466,314	+				+0.0
3,466,314	+				-0.7
3,466,315	-				+0.7
3,466,483	-		PP_3081	0.28	-0.6
3,466,525	-		PP_3081	0.37	-0.4
3,466,623	+		PP_3081	0.57	-0.8
3,466,623	+		PP_3081	0.57	-0.1
3,466,624	-		PP_3081	0.58	-0.8
3,467,795	+		PP_3082	0.33	-0.9