Strain Fitness in Pseudomonas putida KT2440 around PP_2970

Experiment: Cholinium aspartate 10 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cholinium aspartate 10 vol%
3,371,289	-		PP_2968	0.57	-0.9
3,371,289	-		PP_2968	0.57	-0.7
3,371,386	+		PP_2968	0.66	+0.1
3,371,387	-		PP_2968	0.66	+0.7
3,371,387	-		PP_2968	0.66	+0.1
3,371,387	-		PP_2968	0.66	-0.7
3,371,474	+		PP_2968	0.73	+0.1
3,371,474	+		PP_2968	0.73	+0.9
3,371,475	-		PP_2968	0.74	-0.9
3,371,475	-		PP_2968	0.74	+0.8
3,371,478	+		PP_2968	0.74	-0.5
3,371,478	+		PP_2968	0.74	-0.9
3,371,478	+		PP_2968	0.74	-1.3
3,371,478	+		PP_2968	0.74	+0.7
3,371,479	-		PP_2968	0.74	+0.5
3,371,479	-		PP_2968	0.74	+0.6
3,371,479	-		PP_2968	0.74	+0.1
3,371,479	-		PP_2968	0.74	+0.0
3,371,479	-		PP_2968	0.74	+0.6
3,371,503	+		PP_2968	0.76	-0.4
3,371,542	+		PP_2968	0.79	+0.4
3,371,543	-		PP_2968	0.80	+0.3
3,371,543	-		PP_2968	0.80	-0.2
3,371,543	-		PP_2968	0.80	-0.8
3,371,646	-		PP_2968	0.89	+1.1
3,371,682	+				+0.3
3,371,722	+				+0.2
3,371,722	+				+0.5
3,371,722	+				+0.1
3,371,723	-				+0.7
3,371,723	-				+0.7
3,371,723	-				+0.3
3,371,786	+				-1.1
3,371,786	+				+0.9
3,371,792	+				-0.9
3,371,793	-				-0.1
3,371,796	+				+0.5
3,371,797	-				-0.3
3,371,797	-				-1.0
3,371,878	-		PP_2969	0.32	+0.0
3,371,889	+		PP_2969	0.36	+0.5
3,372,028	-		PP_2969	0.84	-1.2
3,372,028	-		PP_2969	0.84	-0.5
3,372,028	-		PP_2969	0.84	-0.1
3,372,033	+		PP_2969	0.86	-0.6
3,372,033	+		PP_2969	0.86	-0.1
3,372,034	-		PP_2969	0.86	+0.0
3,372,100	-				+0.1
3,372,144	+				-0.6
3,372,145	-				+0.4
3,372,145	-				+0.8
3,372,169	+				+0.4
3,372,169	+				+0.8
3,372,214	+				+1.0
3,372,214	+				+0.0
3,372,215	-				+0.2
3,372,249	+		PP_2970	0.16	+0.6
3,372,460	+		PP_2970	0.75	+0.2
3,372,460	+		PP_2970	0.75	-0.4
3,372,461	-		PP_2970	0.75	+0.6
3,372,486	-		PP_2970	0.82	-0.3
3,372,553	+				-0.7
3,372,581	+				-0.1
3,372,582	-				+0.0
3,372,656	+				-1.3
3,372,656	+				+0.1
3,372,659	+				+0.0
3,372,894	+				+0.1
3,373,087	+		PP_2971	0.24	+0.4
3,373,088	-		PP_2971	0.24	+0.3
3,373,088	-		PP_2971	0.24	+0.1
3,373,219	+		PP_2971	0.36	-0.6
3,373,248	+		PP_2971	0.39	+0.7
3,373,249	-		PP_2971	0.39	+0.3
3,373,279	-		PP_2971	0.42	+0.5
3,373,279	-		PP_2971	0.42	+1.4
3,373,279	-		PP_2971	0.42	-1.2
3,373,324	+		PP_2971	0.46	-0.4
3,373,324	+		PP_2971	0.46	+0.2
3,373,405	+		PP_2971	0.54	-1.8
3,373,406	-		PP_2971	0.54	+0.4