Strain Fitness in Pseudomonas putida KT2440 around PP_1615

Experiment: Cholinium aspartate 10 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cholinium aspartate 10 vol%
1,811,435	+				-0.9
1,811,435	+				-0.2
1,811,435	+				-0.3
1,811,436	-				+1.1
1,811,473	+				+0.0
1,811,473	+				-0.1
1,811,474	-				-0.7
1,811,503	+				+0.5
1,811,503	+				-0.4
1,811,503	+				+0.0
1,811,535	-				-0.5
1,811,627	-		PP_1615	0.12	+0.5
1,811,699	+		PP_1615	0.20	-0.2
1,811,699	+		PP_1615	0.20	+0.4
1,811,699	+		PP_1615	0.20	+0.4
1,811,700	-		PP_1615	0.20	+0.4
1,811,700	-		PP_1615	0.20	-0.4
1,811,700	-		PP_1615	0.20	-0.2
1,811,700	-		PP_1615	0.20	-0.6
1,811,702	+		PP_1615	0.20	-0.3
1,811,703	-		PP_1615	0.20	-0.5
1,811,778	+		PP_1615	0.29	-0.3
1,811,779	-		PP_1615	0.29	-0.5
1,811,779	-		PP_1615	0.29	-0.7
1,811,779	-		PP_1615	0.29	+0.6
1,811,819	-		PP_1615	0.33	-0.4
1,811,891	+		PP_1615	0.41	+0.3
1,811,892	-		PP_1615	0.41	+0.3
1,811,903	+		PP_1615	0.43	-1.4
1,811,924	+		PP_1615	0.45	-1.0
1,811,924	+		PP_1615	0.45	+0.2
1,811,924	+		PP_1615	0.45	-1.0
1,811,924	+		PP_1615	0.45	-0.2
1,811,925	-		PP_1615	0.45	+0.0
1,811,925	-		PP_1615	0.45	-0.1
1,812,063	-		PP_1615	0.60	-0.2
1,812,461	+				-0.5
1,812,461	+				-0.3
1,812,660	+		PP_1616	0.12	-0.5
1,812,661	-		PP_1616	0.12	-2.0
1,812,661	-		PP_1616	0.12	-0.2
1,812,661	-		PP_1616	0.12	-0.3
1,812,662	+		PP_1616	0.13	-1.2
1,812,662	+		PP_1616	0.13	-0.5
1,812,662	+		PP_1616	0.13	-0.4
1,812,663	-		PP_1616	0.13	+0.7
1,812,690	-		PP_1616	0.15	-1.8
1,812,690	-		PP_1616	0.15	-0.2
1,812,690	-		PP_1616	0.15	-1.3
1,812,790	-		PP_1616	0.24	-1.4
1,812,790	-		PP_1616	0.24	-0.6
1,812,906	+		PP_1616	0.34	+0.3
1,812,930	+		PP_1616	0.37	-1.4
1,812,930	+		PP_1616	0.37	+0.4
1,812,930	+		PP_1616	0.37	-1.4
1,812,931	-		PP_1616	0.37	-0.3
1,812,931	-		PP_1616	0.37	-0.8
1,812,957	+		PP_1616	0.39	-1.0
1,813,091	+		PP_1616	0.51	+0.6
1,813,091	+		PP_1616	0.51	-0.9
1,813,092	-		PP_1616	0.51	+0.6
1,813,166	+		PP_1616	0.58	-0.0
1,813,248	+		PP_1616	0.65	-1.2
1,813,248	+		PP_1616	0.65	-1.2
1,813,249	-		PP_1616	0.65	-0.6
1,813,249	-		PP_1616	0.65	-1.3