Strain Fitness in Escherichia coli BL21 around ECD_04185

Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_04183 and ECD_04184 are separated by 64 nucleotidesECD_04184 and ECD_04185 are separated by 36 nucleotidesECD_04185 and ECD_04186 are separated by 66 nucleotides ECD_04183: ECD_04183 - major type 1 subunit fimbrin (pilin), at 4,452,394 to 4,452,942 _04183 ECD_04184: ECD_04184 - fimbrial protein involved in type 1 pilus biosynthesis, at 4,453,007 to 4,453,546 _04184 ECD_04185: ECD_04185 - periplasmic chaperone, at 4,453,583 to 4,454,308 _04185 ECD_04186: ECD_04186 - fimbrial usher outer membrane porin protein; FimCD chaperone-usher, at 4,454,375 to 4,457,011 _04186 Position (kb) 4453 4454 4455Strain fitness (log2 ratio) -2 -1 0 1at 4452.624 kb on + strand, within ECD_04183at 4452.664 kb on - strand, within ECD_04183at 4452.664 kb on - strand, within ECD_04183at 4452.708 kb on + strand, within ECD_04183at 4452.816 kb on + strand, within ECD_04183at 4452.817 kb on - strand, within ECD_04183at 4452.850 kb on - strand, within ECD_04183at 4452.850 kb on - strand, within ECD_04183at 4452.934 kb on + strandat 4453.023 kb on + strandat 4453.023 kb on + strandat 4453.078 kb on + strand, within ECD_04184at 4453.255 kb on + strand, within ECD_04184at 4453.278 kb on + strand, within ECD_04184at 4453.279 kb on - strand, within ECD_04184at 4453.279 kb on - strand, within ECD_04184at 4453.447 kb on + strand, within ECD_04184at 4453.560 kb on - strandat 4453.606 kb on - strandat 4453.763 kb on - strand, within ECD_04185at 4453.781 kb on + strand, within ECD_04185at 4454.621 kb on + strandat 4454.638 kb on + strandat 4454.918 kb on - strand, within ECD_04186at 4455.065 kb on - strand, within ECD_04186at 4455.136 kb on - strand, within ECD_04186at 4455.138 kb on + strand, within ECD_04186at 4455.173 kb on + strand, within ECD_04186at 4455.238 kb on + strand, within ECD_04186

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_1
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4,452,624 + ECD_04183 0.42 -0.5
4,452,664 - ECD_04183 0.49 -2.5
4,452,664 - ECD_04183 0.49 -0.7
4,452,708 + ECD_04183 0.57 +0.5
4,452,816 + ECD_04183 0.77 -0.8
4,452,817 - ECD_04183 0.77 -0.4
4,452,850 - ECD_04183 0.83 -0.6
4,452,850 - ECD_04183 0.83 +0.1
4,452,934 + +0.1
4,453,023 + -1.0
4,453,023 + -0.7
4,453,078 + ECD_04184 0.13 -0.7
4,453,255 + ECD_04184 0.46 +0.3
4,453,278 + ECD_04184 0.50 -0.6
4,453,279 - ECD_04184 0.50 -0.3
4,453,279 - ECD_04184 0.50 -1.6
4,453,447 + ECD_04184 0.81 -0.5
4,453,560 - -2.1
4,453,606 - -1.3
4,453,763 - ECD_04185 0.25 -0.8
4,453,781 + ECD_04185 0.27 -1.5
4,454,621 + +0.6
4,454,638 + -0.2
4,454,918 - ECD_04186 0.21 -0.8
4,455,065 - ECD_04186 0.26 -2.0
4,455,136 - ECD_04186 0.29 -1.6
4,455,138 + ECD_04186 0.29 +0.3
4,455,173 + ECD_04186 0.30 -1.0
4,455,238 + ECD_04186 0.33 -0.6

Or see this region's nucleotide sequence