Strain Fitness in Escherichia coli BL21 around ECD_04003

Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_04002 and ECD_04003 are separated by 79 nucleotidesECD_04003 and ECD_04004 are separated by 365 nucleotides ECD_04002: ECD_04002 - lysine decarboxylase, acid-inducible, at 4,263,555 to 4,265,702 _04002 ECD_04003: ECD_04003 - putative lysine/cadaverine transporter, at 4,265,782 to 4,267,116 _04003 ECD_04004: ECD_04004 - cadBA operon transcriptional activator, at 4,267,482 to 4,269,020 _04004 Position (kb) 4265 4266 4267 4268Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 4264.785 kb on - strand, within ECD_04002at 4264.797 kb on + strand, within ECD_04002at 4264.797 kb on + strand, within ECD_04002at 4264.797 kb on + strand, within ECD_04002at 4264.797 kb on + strand, within ECD_04002at 4264.798 kb on - strand, within ECD_04002at 4264.807 kb on - strand, within ECD_04002at 4264.853 kb on + strand, within ECD_04002at 4264.854 kb on - strand, within ECD_04002at 4264.921 kb on + strand, within ECD_04002at 4265.014 kb on + strand, within ECD_04002at 4265.015 kb on - strand, within ECD_04002at 4265.015 kb on - strand, within ECD_04002at 4265.019 kb on - strand, within ECD_04002at 4265.019 kb on - strand, within ECD_04002at 4265.046 kb on - strand, within ECD_04002at 4265.046 kb on - strand, within ECD_04002at 4265.062 kb on + strand, within ECD_04002at 4265.062 kb on + strand, within ECD_04002at 4265.063 kb on - strand, within ECD_04002at 4265.063 kb on - strand, within ECD_04002at 4265.063 kb on - strand, within ECD_04002at 4265.063 kb on - strand, within ECD_04002at 4265.095 kb on + strand, within ECD_04002at 4265.095 kb on + strand, within ECD_04002at 4265.095 kb on + strand, within ECD_04002at 4265.166 kb on - strand, within ECD_04002at 4265.268 kb on - strand, within ECD_04002at 4265.292 kb on - strand, within ECD_04002at 4265.330 kb on + strand, within ECD_04002at 4265.367 kb on - strand, within ECD_04002at 4265.403 kb on - strand, within ECD_04002at 4265.430 kb on + strand, within ECD_04002at 4265.446 kb on + strand, within ECD_04002at 4265.708 kb on + strandat 4265.783 kb on + strandat 4265.883 kb on + strandat 4266.014 kb on + strand, within ECD_04003at 4266.014 kb on + strand, within ECD_04003at 4266.014 kb on + strand, within ECD_04003at 4266.020 kb on + strand, within ECD_04003at 4266.020 kb on + strand, within ECD_04003at 4266.031 kb on - strand, within ECD_04003at 4266.040 kb on + strand, within ECD_04003at 4266.041 kb on - strand, within ECD_04003at 4266.223 kb on + strand, within ECD_04003at 4266.223 kb on + strand, within ECD_04003at 4266.223 kb on + strand, within ECD_04003at 4266.223 kb on + strand, within ECD_04003at 4266.223 kb on + strand, within ECD_04003at 4266.380 kb on + strand, within ECD_04003at 4266.380 kb on + strand, within ECD_04003at 4266.380 kb on + strand, within ECD_04003at 4266.380 kb on + strand, within ECD_04003at 4266.381 kb on - strand, within ECD_04003at 4266.381 kb on - strand, within ECD_04003at 4266.385 kb on - strand, within ECD_04003at 4266.421 kb on - strand, within ECD_04003at 4266.421 kb on - strand, within ECD_04003at 4266.421 kb on - strand, within ECD_04003at 4266.463 kb on - strand, within ECD_04003at 4266.483 kb on + strand, within ECD_04003at 4266.489 kb on + strand, within ECD_04003at 4266.494 kb on - strand, within ECD_04003at 4266.494 kb on - strand, within ECD_04003at 4266.546 kb on + strand, within ECD_04003at 4266.588 kb on + strand, within ECD_04003at 4266.596 kb on + strand, within ECD_04003at 4266.651 kb on + strand, within ECD_04003at 4266.772 kb on + strand, within ECD_04003at 4266.773 kb on - strand, within ECD_04003at 4266.798 kb on - strand, within ECD_04003at 4266.953 kb on + strand, within ECD_04003at 4266.953 kb on + strand, within ECD_04003at 4267.515 kb on + strandat 4267.516 kb on - strandat 4268.010 kb on + strand, within ECD_04004

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_1
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4,264,785 - ECD_04002 0.57 -1.1
4,264,797 + ECD_04002 0.58 +0.1
4,264,797 + ECD_04002 0.58 -0.2
4,264,797 + ECD_04002 0.58 -0.6
4,264,797 + ECD_04002 0.58 -1.0
4,264,798 - ECD_04002 0.58 -2.2
4,264,807 - ECD_04002 0.58 -1.4
4,264,853 + ECD_04002 0.60 +0.4
4,264,854 - ECD_04002 0.60 -1.5
4,264,921 + ECD_04002 0.64 +0.1
4,265,014 + ECD_04002 0.68 +0.2
4,265,015 - ECD_04002 0.68 -0.5
4,265,015 - ECD_04002 0.68 -2.3
4,265,019 - ECD_04002 0.68 +0.9
4,265,019 - ECD_04002 0.68 +0.1
4,265,046 - ECD_04002 0.69 -0.7
4,265,046 - ECD_04002 0.69 -1.1
4,265,062 + ECD_04002 0.70 -0.4
4,265,062 + ECD_04002 0.70 -0.6
4,265,063 - ECD_04002 0.70 +0.1
4,265,063 - ECD_04002 0.70 -0.0
4,265,063 - ECD_04002 0.70 -0.4
4,265,063 - ECD_04002 0.70 +0.2
4,265,095 + ECD_04002 0.72 -0.6
4,265,095 + ECD_04002 0.72 -0.0
4,265,095 + ECD_04002 0.72 -1.4
4,265,166 - ECD_04002 0.75 -0.7
4,265,268 - ECD_04002 0.80 +0.1
4,265,292 - ECD_04002 0.81 -0.8
4,265,330 + ECD_04002 0.83 -1.4
4,265,367 - ECD_04002 0.84 -1.0
4,265,403 - ECD_04002 0.86 -1.2
4,265,430 + ECD_04002 0.87 -1.0
4,265,446 + ECD_04002 0.88 -2.0
4,265,708 + -0.9
4,265,783 + +0.3
4,265,883 + -0.2
4,266,014 + ECD_04003 0.17 -0.6
4,266,014 + ECD_04003 0.17 -0.2
4,266,014 + ECD_04003 0.17 -0.9
4,266,020 + ECD_04003 0.18 -1.2
4,266,020 + ECD_04003 0.18 -0.4
4,266,031 - ECD_04003 0.19 -1.6
4,266,040 + ECD_04003 0.19 -3.3
4,266,041 - ECD_04003 0.19 -0.8
4,266,223 + ECD_04003 0.33 -0.1
4,266,223 + ECD_04003 0.33 -2.5
4,266,223 + ECD_04003 0.33 -0.7
4,266,223 + ECD_04003 0.33 -0.9
4,266,223 + ECD_04003 0.33 -0.3
4,266,380 + ECD_04003 0.45 -1.2
4,266,380 + ECD_04003 0.45 -1.7
4,266,380 + ECD_04003 0.45 -1.2
4,266,380 + ECD_04003 0.45 -0.9
4,266,381 - ECD_04003 0.45 -0.2
4,266,381 - ECD_04003 0.45 -0.1
4,266,385 - ECD_04003 0.45 +0.0
4,266,421 - ECD_04003 0.48 -0.7
4,266,421 - ECD_04003 0.48 +2.0
4,266,421 - ECD_04003 0.48 -0.2
4,266,463 - ECD_04003 0.51 +0.1
4,266,483 + ECD_04003 0.53 -0.8
4,266,489 + ECD_04003 0.53 -2.6
4,266,494 - ECD_04003 0.53 -0.3
4,266,494 - ECD_04003 0.53 +0.6
4,266,546 + ECD_04003 0.57 -0.9
4,266,588 + ECD_04003 0.60 -1.1
4,266,596 + ECD_04003 0.61 -1.6
4,266,651 + ECD_04003 0.65 -1.7
4,266,772 + ECD_04003 0.74 -1.4
4,266,773 - ECD_04003 0.74 -0.4
4,266,798 - ECD_04003 0.76 -3.2
4,266,953 + ECD_04003 0.88 -2.0
4,266,953 + ECD_04003 0.88 -1.3
4,267,515 + -4.1
4,267,516 - -1.3
4,268,010 + ECD_04004 0.34 -0.6

Or see this region's nucleotide sequence