Strain Fitness in Escherichia coli BL21 around ECD_03992

Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03991 and ECD_03992 are separated by 138 nucleotidesECD_03992 and ECD_03993 are separated by 122 nucleotides ECD_03991: ECD_03991 - melibiose:sodium symporter, at 4,250,460 to 4,251,869 _03991 ECD_03992: ECD_03992 - DUF2238 family inner membrane protein, at 4,252,008 to 4,252,637 _03992 ECD_03993: ECD_03993 - anaerobic class I fumarate hydratase (fumarase B), at 4,252,760 to 4,254,406 _03993 Position (kb) 4252 4253Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4251.017 kb on + strand, within ECD_03991at 4251.018 kb on - strand, within ECD_03991at 4251.107 kb on + strand, within ECD_03991at 4251.175 kb on - strand, within ECD_03991at 4251.175 kb on - strand, within ECD_03991at 4251.176 kb on + strand, within ECD_03991at 4251.177 kb on - strand, within ECD_03991at 4251.195 kb on - strand, within ECD_03991at 4251.209 kb on + strand, within ECD_03991at 4251.210 kb on - strand, within ECD_03991at 4251.210 kb on - strand, within ECD_03991at 4251.213 kb on + strand, within ECD_03991at 4251.214 kb on - strand, within ECD_03991at 4251.217 kb on - strand, within ECD_03991at 4251.225 kb on + strand, within ECD_03991at 4251.225 kb on + strand, within ECD_03991at 4251.225 kb on + strand, within ECD_03991at 4251.226 kb on - strand, within ECD_03991at 4251.226 kb on - strand, within ECD_03991at 4251.227 kb on - strand, within ECD_03991at 4251.255 kb on + strand, within ECD_03991at 4251.259 kb on - strand, within ECD_03991at 4251.259 kb on - strand, within ECD_03991at 4251.259 kb on - strand, within ECD_03991at 4251.296 kb on - strand, within ECD_03991at 4251.299 kb on - strand, within ECD_03991at 4251.370 kb on + strand, within ECD_03991at 4251.400 kb on + strand, within ECD_03991at 4251.400 kb on + strand, within ECD_03991at 4251.408 kb on + strand, within ECD_03991at 4251.408 kb on + strand, within ECD_03991at 4251.409 kb on - strand, within ECD_03991at 4251.409 kb on - strand, within ECD_03991at 4251.409 kb on - strand, within ECD_03991at 4251.409 kb on - strand, within ECD_03991at 4251.478 kb on + strand, within ECD_03991at 4251.479 kb on - strand, within ECD_03991at 4251.479 kb on - strand, within ECD_03991at 4251.500 kb on + strand, within ECD_03991at 4251.521 kb on + strand, within ECD_03991at 4251.521 kb on + strand, within ECD_03991at 4251.532 kb on + strand, within ECD_03991at 4251.533 kb on - strand, within ECD_03991at 4251.533 kb on - strand, within ECD_03991at 4251.533 kb on - strand, within ECD_03991at 4251.552 kb on + strand, within ECD_03991at 4251.566 kb on + strand, within ECD_03991at 4251.567 kb on - strand, within ECD_03991at 4251.633 kb on + strand, within ECD_03991at 4251.633 kb on + strand, within ECD_03991at 4251.634 kb on - strand, within ECD_03991at 4251.638 kb on - strand, within ECD_03991at 4251.638 kb on - strand, within ECD_03991at 4251.657 kb on - strand, within ECD_03991at 4251.668 kb on - strand, within ECD_03991at 4251.668 kb on - strand, within ECD_03991at 4251.670 kb on + strand, within ECD_03991at 4251.671 kb on - strand, within ECD_03991at 4251.671 kb on - strand, within ECD_03991at 4251.674 kb on + strand, within ECD_03991at 4251.674 kb on + strand, within ECD_03991at 4251.675 kb on - strand, within ECD_03991at 4251.686 kb on + strand, within ECD_03991at 4251.686 kb on + strand, within ECD_03991at 4251.794 kb on + strandat 4251.880 kb on - strandat 4251.880 kb on - strandat 4251.880 kb on - strandat 4251.932 kb on - strandat 4251.932 kb on - strandat 4252.065 kb on + strandat 4252.104 kb on - strand, within ECD_03992at 4252.192 kb on - strand, within ECD_03992at 4252.198 kb on + strand, within ECD_03992at 4252.250 kb on + strand, within ECD_03992at 4252.250 kb on + strand, within ECD_03992at 4252.250 kb on + strand, within ECD_03992at 4252.264 kb on + strand, within ECD_03992at 4252.265 kb on - strand, within ECD_03992at 4252.399 kb on + strand, within ECD_03992at 4252.405 kb on + strand, within ECD_03992at 4252.406 kb on - strand, within ECD_03992at 4252.406 kb on - strand, within ECD_03992at 4252.452 kb on - strand, within ECD_03992at 4252.453 kb on + strand, within ECD_03992at 4252.453 kb on + strand, within ECD_03992at 4252.454 kb on - strand, within ECD_03992at 4252.454 kb on - strand, within ECD_03992at 4252.511 kb on + strand, within ECD_03992at 4252.512 kb on - strand, within ECD_03992at 4252.512 kb on - strand, within ECD_03992at 4252.571 kb on - strand, within ECD_03992at 4252.670 kb on - strandat 4252.670 kb on - strandat 4252.670 kb on - strandat 4252.761 kb on + strandat 4252.761 kb on + strandat 4252.762 kb on - strandat 4252.762 kb on - strandat 4252.765 kb on + strandat 4252.765 kb on + strandat 4252.765 kb on + strandat 4252.766 kb on - strandat 4252.813 kb on + strandat 4252.853 kb on + strandat 4252.854 kb on - strandat 4252.870 kb on + strandat 4252.958 kb on - strand, within ECD_03993at 4252.965 kb on + strand, within ECD_03993at 4252.965 kb on + strand, within ECD_03993at 4252.981 kb on + strand, within ECD_03993at 4253.068 kb on - strand, within ECD_03993at 4253.068 kb on - strand, within ECD_03993at 4253.149 kb on - strand, within ECD_03993at 4253.225 kb on - strand, within ECD_03993at 4253.239 kb on + strand, within ECD_03993at 4253.239 kb on + strand, within ECD_03993at 4253.373 kb on + strand, within ECD_03993at 4253.534 kb on - strand, within ECD_03993

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_1
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4,251,017 + ECD_03991 0.40 -0.3
4,251,018 - ECD_03991 0.40 -0.4
4,251,107 + ECD_03991 0.46 -0.8
4,251,175 - ECD_03991 0.51 -1.8
4,251,175 - ECD_03991 0.51 -0.5
4,251,176 + ECD_03991 0.51 -1.1
4,251,177 - ECD_03991 0.51 -0.2
4,251,195 - ECD_03991 0.52 -1.3
4,251,209 + ECD_03991 0.53 -0.8
4,251,210 - ECD_03991 0.53 -0.5
4,251,210 - ECD_03991 0.53 -0.5
4,251,213 + ECD_03991 0.53 -0.7
4,251,214 - ECD_03991 0.53 +0.1
4,251,217 - ECD_03991 0.54 -0.2
4,251,225 + ECD_03991 0.54 -0.9
4,251,225 + ECD_03991 0.54 +0.1
4,251,225 + ECD_03991 0.54 -0.9
4,251,226 - ECD_03991 0.54 -1.0
4,251,226 - ECD_03991 0.54 -0.7
4,251,227 - ECD_03991 0.54 -0.5
4,251,255 + ECD_03991 0.56 -1.6
4,251,259 - ECD_03991 0.57 -0.6
4,251,259 - ECD_03991 0.57 -0.4
4,251,259 - ECD_03991 0.57 -0.4
4,251,296 - ECD_03991 0.59 +0.3
4,251,299 - ECD_03991 0.60 -0.8
4,251,370 + ECD_03991 0.65 -1.0
4,251,400 + ECD_03991 0.67 -0.4
4,251,400 + ECD_03991 0.67 -0.3
4,251,408 + ECD_03991 0.67 +0.1
4,251,408 + ECD_03991 0.67 -0.2
4,251,409 - ECD_03991 0.67 +0.0
4,251,409 - ECD_03991 0.67 -0.7
4,251,409 - ECD_03991 0.67 +0.7
4,251,409 - ECD_03991 0.67 -0.4
4,251,478 + ECD_03991 0.72 -0.3
4,251,479 - ECD_03991 0.72 -0.2
4,251,479 - ECD_03991 0.72 -0.2
4,251,500 + ECD_03991 0.74 -0.4
4,251,521 + ECD_03991 0.75 -0.9
4,251,521 + ECD_03991 0.75 -0.4
4,251,532 + ECD_03991 0.76 +0.1
4,251,533 - ECD_03991 0.76 -1.2
4,251,533 - ECD_03991 0.76 -1.1
4,251,533 - ECD_03991 0.76 +0.5
4,251,552 + ECD_03991 0.77 -0.1
4,251,566 + ECD_03991 0.78 -0.1
4,251,567 - ECD_03991 0.79 -1.0
4,251,633 + ECD_03991 0.83 -1.5
4,251,633 + ECD_03991 0.83 -0.6
4,251,634 - ECD_03991 0.83 -2.6
4,251,638 - ECD_03991 0.84 -1.6
4,251,638 - ECD_03991 0.84 +0.2
4,251,657 - ECD_03991 0.85 -3.6
4,251,668 - ECD_03991 0.86 +1.3
4,251,668 - ECD_03991 0.86 -1.3
4,251,670 + ECD_03991 0.86 +0.3
4,251,671 - ECD_03991 0.86 -1.5
4,251,671 - ECD_03991 0.86 -0.4
4,251,674 + ECD_03991 0.86 +0.2
4,251,674 + ECD_03991 0.86 -0.9
4,251,675 - ECD_03991 0.86 -1.1
4,251,686 + ECD_03991 0.87 -0.9
4,251,686 + ECD_03991 0.87 -1.5
4,251,794 + -0.6
4,251,880 - -0.4
4,251,880 - -0.0
4,251,880 - +0.2
4,251,932 - -0.2
4,251,932 - -0.7
4,252,065 + -0.4
4,252,104 - ECD_03992 0.15 -1.0
4,252,192 - ECD_03992 0.29 +0.2
4,252,198 + ECD_03992 0.30 -0.9
4,252,250 + ECD_03992 0.38 -0.9
4,252,250 + ECD_03992 0.38 -0.4
4,252,250 + ECD_03992 0.38 -0.6
4,252,264 + ECD_03992 0.41 +0.5
4,252,265 - ECD_03992 0.41 +0.5
4,252,399 + ECD_03992 0.62 +0.7
4,252,405 + ECD_03992 0.63 +0.5
4,252,406 - ECD_03992 0.63 +0.0
4,252,406 - ECD_03992 0.63 +0.2
4,252,452 - ECD_03992 0.70 -0.4
4,252,453 + ECD_03992 0.71 -0.2
4,252,453 + ECD_03992 0.71 +0.3
4,252,454 - ECD_03992 0.71 -2.2
4,252,454 - ECD_03992 0.71 -0.8
4,252,511 + ECD_03992 0.80 +0.3
4,252,512 - ECD_03992 0.80 +1.9
4,252,512 - ECD_03992 0.80 -1.3
4,252,571 - ECD_03992 0.89 -0.3
4,252,670 - +0.7
4,252,670 - -0.8
4,252,670 - -1.7
4,252,761 + -0.2
4,252,761 + -0.4
4,252,762 - +0.2
4,252,762 - +0.6
4,252,765 + -0.7
4,252,765 + -0.1
4,252,765 + +0.8
4,252,766 - -0.2
4,252,813 + +0.4
4,252,853 + -0.4
4,252,854 - -0.2
4,252,870 + -1.1
4,252,958 - ECD_03993 0.12 -0.2
4,252,965 + ECD_03993 0.12 +0.1
4,252,965 + ECD_03993 0.12 -0.7
4,252,981 + ECD_03993 0.13 +0.2
4,253,068 - ECD_03993 0.19 -0.5
4,253,068 - ECD_03993 0.19 +0.3
4,253,149 - ECD_03993 0.24 +0.2
4,253,225 - ECD_03993 0.28 -1.6
4,253,239 + ECD_03993 0.29 -0.7
4,253,239 + ECD_03993 0.29 -0.3
4,253,373 + ECD_03993 0.37 +0.3
4,253,534 - ECD_03993 0.47 -2.0

Or see this region's nucleotide sequence